Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral63g00011 ATGGTTCGTGGAAAGGTTCAGATGAAGAGGATTGAGAACCCGGTGCACAGGCAAGTGACCTTTTGCAAGCGCCGAGCAGGGCTTCTGAAGAAGGCTAAGGAGCTTTCTGTGCTTTGCGATGCTGAAATTGGCCTCCTCATTTTCTCCGCCCACGGGAAGCTCTACGAATTAGCCACCAAAGGAACCATGCAAGGGCTGTTGGAGAGGTACATGAAGTTCACTCGTGGGGCTCAGCTCGAACCTGAACCGGCCATCAATGAATCACATCCTCAGGATGCGAAAGAGGAGATCGATGTGCTGAAACAAGAAATTGGAACCCTGCAAAAGGGTCTCAGTAGTTACTTGTTTGGAGGGGGAATCGGAACAATGACGGTGGAGGAATTACAAGTGTTGGAGAAGTACCTCGAAATGTGGATTTATCAGATTCGTTCAATGAAGATGAATAACATGTTACGTGAAATTCAGACATTGAGGGACAAGGAGGGAATACTCAAAGCTGCAAATAAGTATCTCCAGGATAAGATTGCGGAGAATGCTGGAATTACTAACTTCGGACCGTTGGCTCTTGATACTTACCCTTTGATGATACAAGATGAAATATTTCAGTTTTAG 612 0.4592 MVRGKVQMKRIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGLLIFSAHGKLYELATKGTMQGLLERYMKFTRGAQLEPEPAINESHPQDAKEEIDVLKQEIGTLQKGLSSYLFGGGIGTMTVEELQVLEKYLEMWIYQIRSMKMNNMLREIQTLRDKEGILKAANKYLQDKIAENAGITNFGPLALDTYPLMIQDEIFQF 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral63g00011 203 Gene3D - 15 77 IPR036879 GO:0003677|GO:0046983
Pral63g00011 203 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 149 - -
Pral63g00011 203 Pfam K-box region 87 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral63g00011 203 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral63g00011 203 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Pral63g00011 203 ProSiteProfiles K-box domain profile. 90 181 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral63g00011 203 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral63g00011 203 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral63g00011 203 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral63g00011 203 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral63g00011 203 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 56 IPR002100 GO:0003677|GO:0046983
Pral63g00011 203 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral63g00011 203 SUPERFAMILY SRF-like 1 74 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral63g00011 Pral-Chr63 553673 558523 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral63g00011 1 203 MADS-box Gene Family AT1G71692 61.792 9.98e-77 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral63g00011 K-box 1.4e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral63g00011 - - gmx:100783345 297.745