Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral63g00008 ATGTTTCAAAATATGTTTCCAATGGCTACCAATCAGCCATTCAGTGCCCTCCCTGTCATGCCAGTCCAGGCTATGACCCAGCAGGCTACTCGACATGCCAGGCGGGTTTATGTGGGAGGGCTCCCTCCTACAGCCAATGAGCAGTCTGTTGCAACTTTCTTCAGTCAGGTCATGGCTAAGATTGGAGGAAATACTGCTGGTCCAGGTGATGCTGTTGTTAATGTTTATATCAACCATGACAAGAAGTTTGCTTTTGTTGAAATGAGATCAGTAGAAGAAGCTAGCAATGCAATGGCTCTAGATGGGATTATTTTTGAGGGGGCGCCTGTCAAAGTAAGGAGGCCTACCGATTATAACCCTTCTCTAGCTGCAACCCTTGGCCCTAGCCAGCCTAATCCTAACCTGAATCTGGCTGCTGTGGGCCTAACACCTGGCTCAGCTGGTGGACTTGATGGTCCTGATCGTATATTTGTGGGTGGTCTTCCTTATTACTTTACAGAAACACAGATCCGGGAGCTTTTAGAGACTTTTGGTCCCCTTCGGGGCTTTGATTTGGTGAAAGATAGGGAAACAGGAAACTCAAAGGGTTATGCATTCTGTGTTTATCAAGATCTTGCAGTTACAGATATTGCATGTGCAGCTCTGAATGGAATAAAAATGGGAGACAAGACTCTCACAGTCAGACGAGCCAATCAAGGTGCAAACCAGCCAAAACCTGAGCAAGAAAGCATATTAATGCATGCACAGCAGCAAATTGCTATACAGAAACTCATGCTTCAGCCAGCATTAGTGGCAACGAAAGTTGTTTGTTTAAGTCAGGCTATATCAGCTGATGAGCTCAAAGATGATGAGGACTATGAAGAGATTGTTGATGACATGAGAACAGAGTGCTCTAAATTTGGTACCTTGGTTAATGTTGTGATACCTCGCCCCCAACCAAATGGGGAGCCAGCACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGATGTTGATGGTGCAACAAAAGCACGAGCTGGCTTGAATGGACGGAAATTCGGTGGTAATCAAGTAGTGGCTGTATTTTATCCGGAGAATAAATTTGCTCAGGGAGATTATGAAGGCTAG 1107 0.4535 MFQNMFPMATNQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLAAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANQPKPEQESILMHAQQQIAIQKLMLQPALVATKVVCLSQAISADELKDDEDYEEIVDDMRTECSKFGTLVNVVIPRPQPNGEPAPGVGKVFLEYADVDGATKARAGLNGRKFGGNQVVAVFYPENKFAQGDYEG 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral63g00008 368 Gene3D - 262 367 IPR012677 -
Pral63g00008 368 CDD RRM1_U2AF65 33 115 - -
Pral63g00008 368 SMART rrm2_1 35 113 IPR003954 GO:0003676
Pral63g00008 368 SMART rrm2_1 268 354 IPR003954 GO:0003676
Pral63g00008 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 225 IPR000504 GO:0003723
Pral63g00008 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 351 IPR000504 GO:0003723
Pral63g00008 368 PANTHER RNA-BINDING PROTEIN 1 366 - -
Pral63g00008 368 CDD RRM2_U2AF65 154 230 - -
Pral63g00008 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 232 IPR000504 GO:0003723
Pral63g00008 368 CDD RRM3_U2AF65 266 354 - -
Pral63g00008 368 Gene3D - 129 244 IPR012677 -
Pral63g00008 368 SMART rrm1_1 35 113 IPR000504 GO:0003723
Pral63g00008 368 SMART rrm1_1 155 228 IPR000504 GO:0003723
Pral63g00008 368 SMART rrm1_1 274 355 IPR000504 GO:0003723
Pral63g00008 368 FunFam U2 snRNP auxiliary factor large subunit 29 130 - -
Pral63g00008 368 FunFam U2 snRNP auxiliary factor large subunit 262 367 - -
Pral63g00008 368 SUPERFAMILY RNA-binding domain, RBD 155 357 IPR035979 GO:0003676
Pral63g00008 368 Gene3D - 29 128 IPR012677 -
Pral63g00008 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 359 IPR000504 GO:0003723
Pral63g00008 368 FunFam U2 snRNP auxiliary factor large subunit 131 244 - -
Pral63g00008 368 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 1 366 IPR006529 GO:0003723|GO:0005634|GO:0006397
Pral63g00008 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 117 IPR000504 GO:0003723
Pral63g00008 368 SUPERFAMILY RNA-binding domain, RBD 18 120 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral63g00008 Pral-Chr63 396206 399733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral63g00008 156 347 Eukaryotic Initiation Factors Gene Family AT1G22760 26.289 3.29e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral63g00008 K12837 - gmx:100793801 698.738