Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral63g00002 ATGGGAAGAGGGAAGATAGAAATAAAGAGGATAGAGAACACAACAAATCGGCAAGTGACGTTCTGCAAGAGAAGGAATGGGCTTCTGAAGAAGGCTTATGAGCTGTCTGTGCTCTGTGATGCTGAAGTTGCCCTAATCGTCTTCTCCAGCCGTGGCCGCCTTTACGAGTATTCTAACAACAACATAAGGTCAACTATAGAGAGGTACAAAAAGGCTTGTTCAGATAATTCAGGTGCAAGCTCTATTACTGAAATTAATGCTCAGTATTATCAGCAAGAATCGGCGAAGCTGCGTCAGCAAATTCAGATGCTTCAAAATTCAAACAGGCACTTGATGGGTGATGCGTTGAGCACACTGACTGTGAAGGAACTGAAGCAGCTGGAAAATAGACTCGAAAGAGGAATCTCTCGAATCAGATCCAAGAAGCATGAGATGCTCTTGGCAGAAATCGAGTACCGCCAAAAAAGGGAGATTGAGCTGGAAAATGAAAATCTCTGCCTTCGGACTAAGATCGCTGAAATGGAGAGGTTGGAGCAGCAAGCGAACATGGTGTCAGGAGAGGAGCAGATGAGTGCGATGCAGCAAGCTTTGGCTTCTCGCAATTTCTTCAATCCCACAAACATCATGGAACTTTCTGCCACTCCTTACCCTCACTCTGACAAGAAGATGCTTCACCTTGGGTAA 684 0.4518 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNNIRSTIERYKKACSDNSGASSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSTLTVKELKQLENRLERGISRIRSKKHEMLLAEIEYRQKREIELENENLCLRTKIAEMERLEQQANMVSGEEQMSAMQQALASRNFFNPTNIMELSATPYPHSDKKMLHLG 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral63g00002 227 Pfam K-box region 86 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral63g00002 227 FunFam agamous-like MADS-box protein AGL11 13 96 - -
Pral63g00002 227 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral63g00002 227 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral63g00002 227 Coils Coil 121 144 - -
Pral63g00002 227 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 179 - -
Pral63g00002 227 Gene3D - 14 76 IPR036879 GO:0003677|GO:0046983
Pral63g00002 227 Coils Coil 87 107 - -
Pral63g00002 227 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral63g00002 227 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral63g00002 227 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral63g00002 227 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Pral63g00002 227 Coils Coil 157 187 - -
Pral63g00002 227 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral63g00002 227 SUPERFAMILY SRF-like 2 74 IPR036879 GO:0003677|GO:0046983
Pral63g00002 227 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral63g00002 227 ProSiteProfiles K-box domain profile. 87 177 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral63g00002 Pral-Chr63 113948 125263 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral63g00002 1 227 MADS-box Gene Family AT4G09960 73.391 2.53e-115 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral63g00002 K-box 1.9e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral63g00002 K09264 - gmx:100301905 376.711