Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral627g00002 ATGAGCAAGGAAAGCAGAGAGATAGAGAAGGACGCGACCTCGTCGTCTTCCTCTTTCTCAACGTCACCTGCGAGCAACATGAAGACCGGTGCTAGAATTTCCGATAAAGACAAAGCAATTGCTCAGTACAGCGCGGACGCAGGGATTTTGGCAGAGTATGAGCAATCTGGTGTGTCGGGCAAGTCGTTCGATTACTCAAGGTCGATTCTTGATGCTCCGAAATCCGTGTCGGACGAGAAAATGACGGCTTACTTGTCAAGAATCCAAAGAGGTGGTCTTGTTCAGCCATTTGGTTGTATGCTTGCGATTGAAGAACCCACTTTTCGGATAATTGGGTACAGTGAGAATTGTCTTGAAATGTTGGGTTTAAACGGAAAATCTCATTCAAAACGATTTGTTAGTCTGATTGGAGTTGATGCTACTACTCTCTTCACGCCTTCTTCTGGGGCTTCCCTTGCAAAAGCTGCAGCGTCGAGGGAAATTTCGCTTCTGAACCCCATTTGGGTCTGTTCCAGAACAACACAGAGGCATTTTTATGCTATAATGCATCGGATTGATGTGGGAATTGTAGTTGATTTGGAGCCTGCAAGGTCTAGTGATCATGCATTGTCACTTGCAGGCGCCGTACAGTCTCAGAAACTAGCTGTACGGGCAATTTCAAGGCTGCAATCTCTTCCTGGGGGAGATATTGGAGCTTTGTGTGATGCTGTTGTTGAAGAAGTTCAAAAGCTCACTGGATATGACAGGGTTATGGTTTATAAGTTCCATAAGGATGATCATGGGGAGGTTGTGTCTGAAATCAGAAGGTCGGATTTAGAGCCCTTTTTGGGTTTGCATTACCCTGCCACGGATATCCCTCAAGCTGCTCGCTTCTTATTCAAGCAAAACCGAGTCAGGATGATTTGTGATTGCCATGCAAAACCAGTTAAGGTGATTCAAAGTGAAGAGTTAAGGCAGCCTCTCTGCTTGGTCAATTCTACCCTTAGGTCACCACATCAATGTCACGCACAGTACATGGAAAATATGGGCTCAATTGCTTCTCTGGTTATGGCTGTTATTGTCAATGGAAACGATACCACAAAGCTATGGGGATTGCTCGTTTGTCACCACACCTCACCGCGTCATGTCCCTTTCCCACTTCGCTATGCTTGTGAGTTCTTAATGCAGGCTTTTGGATTGCAGCTCCACATGGAGATGCAATTGGCATCGCAGATGGCAGAGAAGAGAACTCTTAAAACCCAAACCTTACTATGTGACATGCTCCTTCGTGATGCTCCTTCTAGTATTGTCACCCAATCTCCTAGTATAATGGATCTTGTGAAGTGTGACGGTGCTGCACTGCTTTTTGGTGGAAGCTGTTGGCTATTAGGCACAACCCCAACTGAGTCACAGGTAAAAGACATTGCAGAATGGCTACTTAGTAGTCATGGGGACTCAACTGGTTTGAGCACAGATAGTTTGGCTGATGCTGGTTACCCGGATGCTGCTTCACTGGGGGATGCAGTTTGTGGCATGGCAACAGCGAGGATCAATTCAAGGGATTTTTTGTTCTGGTTCAGGTCGCATGCTGCTAAGGAAATCAAATGGGGAGGAGCCAAGCACCACCCAGAGGATAAAGATGATGGAGGAAAGATGAACCCTAGACTTTCATTTAAAGCATTTCTTGAAGTATTAAAAAGCAAAAGTGTGCCATGGGAAGCGTCAGAAATCAATGCTATTCACTCTTTACAGCTTATAATGAGAGATTCATTCCAAGATGCAGAGAACTGTGGTCCTAAGGCTCTAACTCATGTGAAGCAAGAGGACACTGATATGGGCGGGAATGGGATAGAAGAACTCAGTTCAGCGGCATTTGAAATGGTCAGATTGATTGAAACAGCAACAGTTCCAATTTTTGGTGTTGATTCAGCTGGTATAACCAATGGGTGGAATGCAAAAATTGCCGAACTAACAGGTCTGCAAACCAGCGAAGCTATGGGAAAATCTCTTGTAAATGAAGTTGTGGTTGAGGACTCACGGGAAACCGTTGATAATATTCTAAAAAGAGCCCTGGAAGGTCAGGAGGACAAAAATGTTGAGTTGAAGTTGAAACACTTTGGTCCGCATCAGCAAAAATCAGTTGTGTATATTAAGGCAAATGCTTGCACAAGTAGGGATTACAAAAATGCTGTTGTTGGGGTCTGCTTTGTGGGTCAAGACATCACTCATGAGAAATCTGTTCTGGACAAATTTATCAAGTTGGAAGGTGATTACAAAGCAATCATACAGAGTCCCAATCCACTAATCCCACCCATATTTGCTTCAGATGAGAATGCCTGTTGCACTGAATGGAATGCAGCCATGGAAAGGCTAACTGGTTGGAAAAGAGATGAAGTTATTGGGAAAATGCTTCCCGGGGAGATCTTTGGAGGTTTGTGTCGATTAAGAAGTCAAGATTCACTTACGAGTTTCATGATTTTATTATATCAAGGAATCAGTGGCCAAGATTCTGAGAAGTTGCCAATAAGATTTTTCAACAGAAAGGAGGAACTTGTGGAGGTTTGCTTGACAGCGAACAAGAGGATTGATGCAGGTGGTAAAATAATTGGCTGTTTCTGTTTCTTGCAGATTGTACCGCCAGACCCGCAACAGCCCTCAGAAGAACAAAGGCCACAATGCAGAGGAAGGCCTTCTGAGTTTAGGGAATTGGGCTATATATTACAAGAGATAAAGAATCCTTTAAATGGTTTGCGTTTTGCACAAAAATTACTGCAAAATACAGCTGTCTCAGAAAATCAGAAACAATTTCTTGATACTAGTGATGCTTGTGAGAGACAAATTATGACAATTATTGAGGATGCGGATTTTGGAAGTATTGATGAAGGAACTTTGCAGCTAAAAATAGAAGAGTTTTTTCTGGGAAATATCCTAGATGCCATTGTCAGCCAAGTCATGATCTTGATAAGAGAAAGAAACTTGCAGCTCTTTCATGAAATTCCTGATGAAATTAAAACGCTTACTCTATTCGGTGACCAAATAAGGCTTCAAGTGGTCTTGTCTAACTTTTTGATCAATTTGGTTTGCCACACACCATCTCCCAATGGCTGGGTAGAAATAAAGATTTCACCTGGGCTGAAGATAATACAGGATGGAAGTGAGTTTATTCATCTGCAGTTCAGAATGACCCATGCCGGTCAAGGTCTTCCTTCTGAAATTCTTCAGGAAATGTTTGAAGGTGGGAATAAATGGACTACACAGGAAGGTCTAGGGCTATACATGTCAAGAAAAATCCTCATTAGGATGAATGGCCATGTCCACTATGTAAGAGAACAGAACAAGTGTTACTTCCTCATTGATATTCAGCTTAGAACAAGAAAAGAAAGCCAGAGGATTTCTCAGGCGGCAGAGACAAGCATGTCATCTTAG 3405 0.4305 MSKESREIEKDATSSSSSFSTSPASNMKTGARISDKDKAIAQYSADAGILAEYEQSGVSGKSFDYSRSILDAPKSVSDEKMTAYLSRIQRGGLVQPFGCMLAIEEPTFRIIGYSENCLEMLGLNGKSHSKRFVSLIGVDATTLFTPSSGASLAKAAASREISLLNPIWVCSRTTQRHFYAIMHRIDVGIVVDLEPARSSDHALSLAGAVQSQKLAVRAISRLQSLPGGDIGALCDAVVEEVQKLTGYDRVMVYKFHKDDHGEVVSEIRRSDLEPFLGLHYPATDIPQAARFLFKQNRVRMICDCHAKPVKVIQSEELRQPLCLVNSTLRSPHQCHAQYMENMGSIASLVMAVIVNGNDTTKLWGLLVCHHTSPRHVPFPLRYACEFLMQAFGLQLHMEMQLASQMAEKRTLKTQTLLCDMLLRDAPSSIVTQSPSIMDLVKCDGAALLFGGSCWLLGTTPTESQVKDIAEWLLSSHGDSTGLSTDSLADAGYPDAASLGDAVCGMATARINSRDFLFWFRSHAAKEIKWGGAKHHPEDKDDGGKMNPRLSFKAFLEVLKSKSVPWEASEINAIHSLQLIMRDSFQDAENCGPKALTHVKQEDTDMGGNGIEELSSAAFEMVRLIETATVPIFGVDSAGITNGWNAKIAELTGLQTSEAMGKSLVNEVVVEDSRETVDNILKRALEGQEDKNVELKLKHFGPHQQKSVVYIKANACTSRDYKNAVVGVCFVGQDITHEKSVLDKFIKLEGDYKAIIQSPNPLIPPIFASDENACCTEWNAAMERLTGWKRDEVIGKMLPGEIFGGLCRLRSQDSLTSFMILLYQGISGQDSEKLPIRFFNRKEELVEVCLTANKRIDAGGKIIGCFCFLQIVPPDPQQPSEEQRPQCRGRPSEFRELGYILQEIKNPLNGLRFAQKLLQNTAVSENQKQFLDTSDACERQIMTIIEDADFGSIDEGTLQLKIEEFFLGNILDAIVSQVMILIRERNLQLFHEIPDEIKTLTLFGDQIRLQVVLSNFLINLVCHTPSPNGWVEIKISPGLKIIQDGSEFIHLQFRMTHAGQGLPSEILQEMFEGGNKWTTQEGLGLYMSRKILIRMNGHVHYVREQNKCYFLIDIQLRTRKESQRISQAAETSMSS 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral627g00002 1134 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Pral627g00002 1134 PRINTS Phytochrome signature 144 166 IPR001294 GO:0006355|GO:0009584
Pral627g00002 1134 PRINTS Phytochrome signature 244 263 IPR001294 GO:0006355|GO:0009584
Pral627g00002 1134 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Pral627g00002 1134 PRINTS Phytochrome signature 619 635 IPR001294 GO:0006355|GO:0009584
Pral627g00002 1134 PRINTS Phytochrome signature 329 350 IPR001294 GO:0006355|GO:0009584
Pral627g00002 1134 PRINTS Phytochrome signature 514 533 IPR001294 GO:0006355|GO:0009584
Pral627g00002 1134 PRINTS Phytochrome signature 638 653 IPR001294 GO:0006355|GO:0009584
Pral627g00002 1134 PRINTS Phytochrome signature 429 449 IPR001294 GO:0006355|GO:0009584
Pral627g00002 1134 PRINTS Phytochrome signature 547 565 IPR001294 GO:0006355|GO:0009584
Pral627g00002 1134 CDD PAS 627 734 IPR000014 -
Pral627g00002 1134 Gene3D PAS domain 763 872 - -
Pral627g00002 1134 ProSiteProfiles Histidine kinase domain profile. 898 1117 IPR005467 -
Pral627g00002 1134 CDD HATPase_Phy-like 1002 1115 IPR044767 -
Pral627g00002 1134 Pfam PAS fold 619 734 IPR013767 GO:0006355
Pral627g00002 1134 Pfam PAS fold 750 869 IPR013767 GO:0006355
Pral627g00002 1134 Pfam His Kinase A (phospho-acceptor) domain 896 955 IPR003661 GO:0000155|GO:0007165
Pral627g00002 1134 Gene3D - 404 577 IPR043150 -
Pral627g00002 1134 ProSiteProfiles PAS repeat profile. 747 802 IPR000014 -
Pral627g00002 1134 FunFam Phytochrome 404 534 - -
Pral627g00002 1134 Gene3D - 210 560 IPR029016 -
Pral627g00002 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 866 IPR035965 -
Pral627g00002 1134 PIRSF Phytochrome_conventional 13 1125 IPR012129 GO:0006355|GO:0009585|GO:0009881|GO:0017006|GO:0042803
Pral627g00002 1134 MobiDBLite consensus disorder prediction 12 29 - -
Pral627g00002 1134 Pfam GAF domain 229 398 IPR003018 GO:0005515
Pral627g00002 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 88 198 IPR035965 -
Pral627g00002 1134 MobiDBLite consensus disorder prediction 1 33 - -
Pral627g00002 1134 SUPERFAMILY GAF domain-like 209 396 - -
Pral627g00002 1134 SUPERFAMILY GAF domain-like 407 585 - -
Pral627g00002 1134 PANTHER OS08G0260000 PROTEIN 80 952 - -
Pral627g00002 1134 ProSiteProfiles PAC domain profile. 690 746 IPR000700 -
Pral627g00002 1134 SMART gaf_1 229 409 IPR003018 GO:0005515
Pral627g00002 1134 Gene3D PAS domain 612 746 - -
Pral627g00002 1134 CDD PAS 761 869 IPR000014 -
Pral627g00002 1134 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 959 1106 IPR036890 -
Pral627g00002 1134 FunFam Phytochrome 763 871 - -
Pral627g00002 1134 SMART HisKA_10 892 955 IPR003661 GO:0000155|GO:0007165
Pral627g00002 1134 FunFam Phytochrome 612 744 - -
Pral627g00002 1134 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 229 389 IPR016132 -
Pral627g00002 1134 Gene3D - 933 1109 IPR036890 -
Pral627g00002 1134 CDD HisKA 894 946 IPR003661 GO:0000155|GO:0007165
Pral627g00002 1134 ProSiteProfiles PAS repeat profile. 616 687 IPR000014 -
Pral627g00002 1134 SMART HKATPase_4 1003 1117 IPR003594 -
Pral627g00002 1134 NCBIfam PAS domain S-box protein 623 738 IPR000014 -
Pral627g00002 1134 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 1003 1111 IPR003594 -
Pral627g00002 1134 SMART pas_2 749 819 IPR000014 -
Pral627g00002 1134 SMART pas_2 618 685 IPR000014 -
Pral627g00002 1134 Pfam Phytochrome region 412 587 IPR013515 GO:0006355|GO:0009584
Pral627g00002 1134 SUPERFAMILY PYP-like sensor domain (PAS domain) 622 730 IPR035965 -
Pral627g00002 1134 ProSitePatterns Phytochrome chromophore attachment site signature. 329 338 IPR013516 -
Pral627g00002 1134 Gene3D PAS domain 87 332 - -
Pral627g00002 1134 Pfam PAS fold 83 196 IPR013654 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral627g00002 Pral-Chr627 4799 10430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral627g00002 20 1117 Histidine Kinase Gene Family AT4G18130 63.612 0.0 1475
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral627g00002 K12123 - gmx:100808192 1777.68