Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral616g00002 ATGCTTTGGGAGGACCTATCCAACATGGTTTTATGTGCTACAAGTCTAACATTAGGCTCACCATGCATGTTGGAGAATGTAATGCTGCCAGTGGGAATTGGGTTTTTATCAATATGGTTGATTCAAATTATAATAAAAGGTGTGGAATCGATCAGGAAGAGGAAGAACAAGGTCTCAGATCAAGACACAGAGATTCATCCCACCGTGCTGGAGTATGGTTTGGCTTGCAAAACCAGTATATTTTGCTGCACTTTACTTCTTGCAGTTCATATCTTGTTGCTTCTGATGGTGGTAAAAGGTGAGACTCAGTGCAACTCAAAACTTGTGGTTTTTACATCAGAGACAGTTCTGGTATTAGCATGGGCAATCACATTGATATCAGTGTGCAAGATGCCCAAAGTCAATGTAAAGTTCCCTTGGATGATAAGATCATGGTGGGTTTGCAGTTTTTTTTTGTGTATTATCAACTTAGCCTTTCATAGCCACTTCAGAATGAGCAAAAAGAAACAGATTGGATTGAGGGAATATGCAGATTTGCTTGGCCTTCTTGCTTCAACGATTCTATTGGGAATTTCAATATGGGGAAGAACTGGGATCGTGTTGATTGCCACGGATGGAATCTCTGAGCCACTCTTGAGTGAGAAAAGTGGCAAGGATTCAGAATCTCTCAAAAGGGAATCTTTATATGGGAAATCTACTTTCCTTCAACTCATTACATTCTCATGGCTCAATCCCTTGTTTGCGGTAGGGTATAAGAAGGCCCTTGAACAGAGTGACATTCCTGATGTTGCCATCGAAGATTCTGCGGAATTTCTATCTTCATCCTTTGATGAGAGCATAAGAAATGTCAAGGAGGCTGATGGGACCACAAATCCATCTATCTATAAGGCGATCTATCTATTTGCTAGGAAGAAGGCTCTGATCAATGCATGTTTTGCAGTGGTAAGTGCAGCAGCATCATATGTTGGCCCATACCTAATCACTGACTTTGTGAGTTTCCTAGCCGAGAAGGGAAGCCTTGGGTTGAATGAAGGATACTTGTTGTCACTTGGATTCTTATGTGCCAAAATGATTGAGACAATAACTCAGAGGCAATGGATTTTTGGCGCTCGACAAGCAGGTCTTCGCCTTAGAGTGGCATTGATATCACACATATATAAGAAGGGCTTGAATCTATCTAGTAAATCGCGCCAAAGACACAGCGGTGGTGAGATCATGAACTATATGAGTGTAGATGTGCAGAGAATCACAGACTTCATGTATTACATAAATGTCATATGGATGCTTCCAGTGCAAGTAACTTTAGCGGTCTGCATTTTGCACACGAACCTTGGCTTGGGTTCATTGGCTGCACTAGCTGCTACGCTGACAGTTATGGGTATGAACATACCTCTTACAAGAATACAGAAGAGATACCAATCTAAGATCATGGAGGCTAAGGATAATAGGATGAAAGCCACATCAGAAGTCCTTAGAAACATGAAGACCCTGAAACTTCAAGCTTGGGATACTGAATTCCAGAACAGGTTAGAAGAACTGAGGGCAACAGAATCCATCTGGTTATGGAAGTCATTAAGACAAGGAGCATTTTCTGCTTTTATTTTCTGGGGATCACCTACATTTATTTCCTTAGTAACCTTCTGGGTATGTATGTTGATGGGGATTGAACTAACAGCTGGAAGAGTTTTATCTGCATTCGCCACATTTCGGATGTTACAGGATCCTATATTTAACTTACCTGATTTACTCAACGTGGTCGCTCAAGGGAAAGTTTCGGTAGACAGAATTGCTTCTTATCTCAGGGAAGAGGAAGTTCAACATAATGCCATTGAGTATGTTCCAAGGGACCATACACAGTTTGATATAGTTATTGAAAAAGGAAGATTCAGCTGGGATTCTGAGCCAAGCAATCCAACCCTTGATGGAATAGATTTAAGAGTCAAAAGAGGAATGAAGGTAGCACTTTGTGGGACTGTAGGTTCTGGAAAGTCTAGCCTACTTTCTAGCATTTTGGGCGAAATGTATAAGCAGTCTGGGACTGTGAAGATCGGTGGAACAAAAGCTTATGTTCCGCAATCACCATGGATATTGACTGGGAATTTTAGGGACAATATCACCTTTGGAAAGGAATACAATAGTGTCAAGTATGAGAAGACTATTGAAGCATGTGCATTGATAAAGGACTTTGAGCTATTCTCCTGTGGTGACCTGACAGAGATTGGAGAAAGAGGGATCAATATGAGTGGAGGACAGAAGCAGAGGATACAAATAGCACGTTCAGTATATCAAGATGCCGATATATATCTCTTTGATGACCCTTTTAGTGCTGTTGATGCTCATACTGGAAGCCACCTCTTCAAGGAGTGCCTTATGGGGGTTCTCAGAGAAAAAACTATACTTTATGTTACCCACCAAGTAGAGTTTCTTCCAGCGGCAGACCTTATTCTGGTGATGCAAAATGGAAGGATTGCACAAGCTGGAACATTTGAACAACTTCTAAAGCAAAATATTGGATTTGAAGTTTTAGTTGGAGCCCATAACCAAGCTTTAGAGTCAATTCTCATGGTTGAGAATTCAAGTAGAAAAACTCTAAACTCAGCACCCGAGGGTGAATCTAACGACAATTCTCAGTCAAATTCAGAACTTTCTCACACTCAACATAACATAGAGCAAGGAAGTCCGCCAGAGATCAATGAAAAAGAAGGTAAGCTTGTGCAAGATGAAGAAAGAGAAAGAGGAAGCATCTCAAGAGAAGTTTACTGGACCTATTTGACCACTGTCAAAGGGGGTGCTCTAGTTCCTCTCATACTTTTGGCTCAATCTTCATTCCAAGTACTTCAGGTTGCCAGTAACTATTGGATGGCTTGGGTTTGCCCTACATCAAGTGATGCCAAGCCTACATTTAAAATGGATTTCATACTACTTGTTTACATGGCACTTTCTGTTGGGAGTGCATTTTGCGTGCTCCTAAGAGCCATACTAGTGGCAAAAGCAGGACTTTGGACTGCACAGAAATTATTTATCAATATGCTGCATAGTATTCTTCGAGCACCAATGTCATTTTTTGATTCAACTCCACATGGCAGAATTTTGAACAGGGCCTCCACAGATCAAAGTGTGCTAGATTTGGAAATGGCAACCAAGTTAGGATGGTGTGCTTTCTCAATAATACAGATTCTGGGTACCATTGCAGTGATGTCACAGGTGGCATGGCAAGTATTTGTCATCTTCATTCCAGTAACTGCAGTCTGCGTATGGTATCAAAGATACTATACACCAACAGCAAGAGAACTGGCTCGCCTGTCACAAATACAAATAGCTCCAATTCTGCACCATTTTGCAGAATCATTGGCAGGAGTAGCATCAATTCGAGCTTTTGATCAAGAAGGCCGTTTTGTATATTCAAATCTTGAGCTCATTGACAGCTACTCAAAACCGTGGTTCCATAACGTATCTGCAATGGAATGGCTTTCTTACAGATTGAATTTACTATCCAATTTTGTTTTTGCCTTCTCACTGGTTTTGCTTGTGGTCCTCCCAGAAGGAATCATCAATCCAAGCATTGCAGGGTTGGCAGTAACTTATGGGATCAATTTGAATGTCCTGCAAGCTTCAGTCATATGGAATATATGTAATGCAGAAAATAAGATGATATCTGTTGAAAGAATTATTCAGTACTCAAATATCAAAAGTGAAGCAGCTCTTGTAATTGAAGATTCTCGGCCTCCAAACAACTGGCCTGAAATTGGAACAATATGTTTCAAAAATCTGCAGATACGTTATGCGGAACATCTGCCCTCTGTTCTGAAAAGCATCAATTGCACATTTCCGGGAAGAAAGAAAATTGGTGTCGTGGGACGAACTGGAAGTGGAAAATCAACCTTAATACAGGCCATTTTCAGGATTGTTGAACCTTGGGAAGGAAGCATCGTAATTGATGATTTGGATATATGCAAGATTGGTCTACATGACTTAAGGTTGAGGCTTAGCATCATTCCACAAGATCCCACAATGTTTGAAGGCACAGTTAGAGGAAACTTGGACCCACTAGAGCAACACTCCGACAAGGAAGTGTGGGAGGCTTTGGATAAATGTCAGCTTGGTCAGCTCGTGAGATCAAAGCAAGAGAAATTGCAAGCCTCAGTGGTTGAAAATGGAGAAAACTGGAGTGCAGGCCAAAGGCAACTATTTTGCCTTGGAAGGGCCTTACTGAAGAAGAGTAGCATACTTGTGCTGGATGAAGCAACGGCATCAGTTGATTCTGCAACAGATGGAGTGATACAGAAGATCATCGGTCAAGAATTCAAAGATAGAACTGTCGTCACAATAGCTCATCGAATCCACACTGTTATCGATAGCGATTTGGTTTTGGTTCTAAGTGATGGAAAAATCGCACAGTTCGATGCGCCATCGAAGTTACTTGAAAGAGAAGATTCCTTCTTTTCCAAACTCATAAGGGAGTACTCAAGAAGGTCACAAAGTTTCATTAGCTTGGCCACTCAAAATGGCCAATGA 4515 0.4122 MLWEDLSNMVLCATSLTLGSPCMLENVMLPVGIGFLSIWLIQIIIKGVESIRKRKNKVSDQDTEIHPTVLEYGLACKTSIFCCTLLLAVHILLLLMVVKGETQCNSKLVVFTSETVLVLAWAITLISVCKMPKVNVKFPWMIRSWWVCSFFLCIINLAFHSHFRMSKKKQIGLREYADLLGLLASTILLGISIWGRTGIVLIATDGISEPLLSEKSGKDSESLKRESLYGKSTFLQLITFSWLNPLFAVGYKKALEQSDIPDVAIEDSAEFLSSSFDESIRNVKEADGTTNPSIYKAIYLFARKKALINACFAVVSAAASYVGPYLITDFVSFLAEKGSLGLNEGYLLSLGFLCAKMIETITQRQWIFGARQAGLRLRVALISHIYKKGLNLSSKSRQRHSGGEIMNYMSVDVQRITDFMYYINVIWMLPVQVTLAVCILHTNLGLGSLAALAATLTVMGMNIPLTRIQKRYQSKIMEAKDNRMKATSEVLRNMKTLKLQAWDTEFQNRLEELRATESIWLWKSLRQGAFSAFIFWGSPTFISLVTFWVCMLMGIELTAGRVLSAFATFRMLQDPIFNLPDLLNVVAQGKVSVDRIASYLREEEVQHNAIEYVPRDHTQFDIVIEKGRFSWDSEPSNPTLDGIDLRVKRGMKVALCGTVGSGKSSLLSSILGEMYKQSGTVKIGGTKAYVPQSPWILTGNFRDNITFGKEYNSVKYEKTIEACALIKDFELFSCGDLTEIGERGINMSGGQKQRIQIARSVYQDADIYLFDDPFSAVDAHTGSHLFKECLMGVLREKTILYVTHQVEFLPAADLILVMQNGRIAQAGTFEQLLKQNIGFEVLVGAHNQALESILMVENSSRKTLNSAPEGESNDNSQSNSELSHTQHNIEQGSPPEINEKEGKLVQDEERERGSISREVYWTYLTTVKGGALVPLILLAQSSFQVLQVASNYWMAWVCPTSSDAKPTFKMDFILLVYMALSVGSAFCVLLRAILVAKAGLWTAQKLFINMLHSILRAPMSFFDSTPHGRILNRASTDQSVLDLEMATKLGWCAFSIIQILGTIAVMSQVAWQVFVIFIPVTAVCVWYQRYYTPTARELARLSQIQIAPILHHFAESLAGVASIRAFDQEGRFVYSNLELIDSYSKPWFHNVSAMEWLSYRLNLLSNFVFAFSLVLLVVLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERIIQYSNIKSEAALVIEDSRPPNNWPEIGTICFKNLQIRYAEHLPSVLKSINCTFPGRKKIGVVGRTGSGKSTLIQAIFRIVEPWEGSIVIDDLDICKIGLHDLRLRLSIIPQDPTMFEGTVRGNLDPLEQHSDKEVWEALDKCQLGQLVRSKQEKLQASVVENGENWSAGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVIQKIIGQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGKIAQFDAPSKLLEREDSFFSKLIREYSRRSQSFISLATQNGQ 1504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral616g00002 1504 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 935 1215 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral616g00002 1504 CDD ABC_6TM_ABCC_D2 933 1227 IPR044726 GO:0140359
Pral616g00002 1504 FunFam ABC transporter C family member 5 607 854 - -
Pral616g00002 1504 MobiDBLite consensus disorder prediction 894 910 - -
Pral616g00002 1504 SUPERFAMILY ABC transporter transmembrane region 933 1232 IPR036640 GO:0005524|GO:0016020
Pral616g00002 1504 Gene3D ABC transporter type 1, transmembrane domain 897 1233 IPR036640 GO:0005524|GO:0016020
Pral616g00002 1504 Gene3D ABC transporter type 1, transmembrane domain 281 605 IPR036640 GO:0005524|GO:0016020
Pral616g00002 1504 FunFam ABC transporter C family member 5 896 1233 - -
Pral616g00002 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1243 1482 IPR027417 -
Pral616g00002 1504 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 588 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral616g00002 1504 Coils Coil 469 489 - -
Pral616g00002 1504 Gene3D - 620 851 IPR027417 -
Pral616g00002 1504 Pfam ABC transporter 1269 1417 IPR003439 GO:0005524
Pral616g00002 1504 SMART AAA_5 649 822 IPR003593 GO:0016887
Pral616g00002 1504 SMART AAA_5 1278 1463 IPR003593 GO:0016887
Pral616g00002 1504 Pfam ABC transporter transmembrane region 944 1179 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral616g00002 1504 Pfam ABC transporter transmembrane region 308 571 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral616g00002 1504 MobiDBLite consensus disorder prediction 861 893 - -
Pral616g00002 1504 Gene3D - 1234 1488 IPR027417 -
Pral616g00002 1504 FunFam ABC transporter C family member 3 1235 1487 - -
Pral616g00002 1504 CDD ABCC_MRP_domain1 622 822 - -
Pral616g00002 1504 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 231 1489 - -
Pral616g00002 1504 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 615 838 IPR027417 -
Pral616g00002 1504 CDD ABCC_MRP_domain2 1250 1470 - -
Pral616g00002 1504 MobiDBLite consensus disorder prediction 861 910 - -
Pral616g00002 1504 FunFam ABC transporter C family member 10 290 604 - -
Pral616g00002 1504 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 618 845 IPR003439 GO:0005524
Pral616g00002 1504 SUPERFAMILY ABC transporter transmembrane region 303 604 IPR036640 GO:0005524|GO:0016020
Pral616g00002 1504 CDD ABC_6TM_ABCC_D1 308 596 IPR044746 GO:0140359
Pral616g00002 1504 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1254 1486 IPR003439 GO:0005524
Pral616g00002 1504 ProSitePatterns ABC transporters family signature. 747 761 IPR017871 GO:0005524|GO:0016887
Pral616g00002 1504 Pfam ABC transporter 640 774 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral616g00002 Pral-Chr616 18163 27676 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral616g00002 605 880 Calmodulin-binding Proteins AT2G36910 27.891 1.14e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral616g00002 - - gmx:100809749 2275.36