Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral616g00001 ATGATTGAGACAATAACTCAGAGGCAATGGATTTTTGGCGCTCGACAAGCAGGTCTTCGCCTTAGAGTGGCATTGATATCACACATATATAAGAAGGGCTTGAATCTATCTAGTAAATCGCGCCAAAGACACAGCGGTGGTGAGATCATGAACTATATGAGTGTAGATGTGCAGAGAATCACAGACTTCATGTATTACATAAATGTCATATGGATGCTTCCAGTGCAAGTAACTTTAGCGGTCTGCATTTTGCACACGAACCTTGGCTTGGGTTCATTGGCTGCACTAGCTGCTACGCTGACAGTTATGGGTATGAACATACCTCTTACAAGAATACAGAAGAGATACCAATCTAAGATCATGGAGGCTAAGGATAATAGGATGAAAGCCACATCAGAAGTCCTTAGAAACATGAAGACCCTGAAACTTCAAGCTTGGGATACTGAATTCCAGAACAGGTTAGAAGAACTGAGGGCAACAGAATCCATCTGGTTATGGAAGTCATTAAGACAAGGAGCATTTTCTGCTTTTATTTTCTGGGGATCACCTACATTTATTTCCTTAGTAACCTTCTGGGTATGTATGTTGATGGGGATTGAACTAACAGCTGGAAGAGTTTTATCTGCATTCGCCACATTTCGGATGTTACAGGATCCTATATTTAACTTACCTGATTTACTCAACGTGGTCGCTCAAGGGAAAGTTTCGGTAGACAGAATTGCTTCTTATCTCAGGGAAGAGGAAGTTCAACATAATGCCATTGAGTATGTTCCAAGGGACCATACACAGTTTGATATAGTTATTGAAAAAGGAAGATTCAGCTGGGATTCTGAGCCAAGCAATCCAACCCTTGATGGAATAGATTTAAGAGTCAAAAGAGGAATGAAGGTAGCACTTTGTGGGACTGTAGGTTCTGGAAAGTCTAGCCTACTTTCTAGCATTTTGGGCGAAATGTATAAGCAGTCTGGGACTGTGAAGATCGGTGGAACAAAAGCTTATGTTCCGCAATCACCATGGATATTGACTGGGAATTTTAGGGACAATATCACCTTTGGAAAGGAATACAATAGTGTCAAGTATGAGAAGACTATTGAAGCATGTGCATTGATAAAGGACTTTGAGCTATTCTCCTGTGGTGACCTGACAGAGATTGGAGAAAGAGGGATCAATATGAGTGGAGGACAGAAGCAGAGGATACAAATAGCACGTTCAGTATATCAAGATGCCGATATATATCTCTTTGATGACCCTTTTAGTGCTGTTGATGCTCATACTGGAAGCCACCTCTTCAAGGAGTGCCTTATGGGGGTTCTCAGAGAAAAAACTATACTTTATGTTACCCACCAAGTAGAGTTTCTTCCAGCGGCAGACCTTATTCTGGTGATGCAAAATGGAAGGATTGCACAAGCTGGAACATTTGAACAACTTCTAAAGCAAAATATTGGATTTGAAGTTTTAGTTGGAGCCCATAACCAAGCTTTAGAGTCAATTCTCATGGTTGAGAATTCAAGTAGAAAAACTCTAAACTCAGCACCCGAGGGTGAATCTAACGACAATTCTCAGTCAAATTCAGAACTTTCTCACACTCAACATAACATAGAGCAAGGAAGTCCGCCAGAGATCAATGAAAAAGAAGGTAAGCTTGTGCAAGATGAAGAAAGAGAAAGAGGAAGCATCTCAAGAGAAGTTTACTGGACCTATTTGACCACTGTCAAAGGGGGTGCTCTAGTTCCTCTCATACTTTTGGCTCAATCTTCATTCCAAGTACTTCAGGTTGCCAGTAACTATTGGATGGCTTGGGTTTGCCCTACATCAAGTGATGCCAAGCCTACATTTAAAATGGATTTCATACTACTTGTTTACATGGCACTTTCTGTTGGGAGTGCATTTTGCGTGCTCCTAAGAGCCATACTAGTGGCAAAAGCAGGACTTTGGACTGCACAGAAATTATTTATCAATATGCTGCATAGTATTCTTCGAGCACCAATGTCATTTTTTGATTCAACTCCACATGGCAGAATTTTGAACAGGGCCTCCACAGATCAAAGTGTGCTAGATTTGGAAATGGCAACCAAGTTAGGATGGTGTGCTTTCTCAATAATACAGATTCTGGGTACCATTGCAGTGATGTCACAGGTGGCATGGCAAGTATTTGTCATCTTCATTCCAGTAACTGCAGTCTGCGTATGGTATCAAAGATACTATACACCAACAGCAAGAGAACTGGCTCGCCTGTCACAAATACAAATAGCTCCAATTCTGCACCATTTTGCAGAATCATTGGCAGGAGTAGCATCAATTCGAGCTTTTGATCAAGAAGGCCGTTTTGTATATTCAAATCTTGAGCTCATTGACAGCTACTCAAAACCGTGGTTCCATAACGTATCTGCAATGGAATGGCTTTCTTACAGATTGAATTTACTATCCAATTTTGTTTTTGCCTTCTCACTGGTTTTGCTTGTGGTCCTCCCAGAAGGAATCATCAATCCAAGCATTGCAGGGTTGGCAGTAACTTATGGGATCAATTTGAATGTCCTGCAAGCTTCAGTCATATGGAATATATGTAATGCAGAAAATAAGATGATATCTGTTGAAAGAATTATTCAGTACTCAAATATCAAAAGTGAAGCAGCTCTTGTAATTGAAGATTCTCGGCCTCCAAACAACTGGCCTGAAATTGGAACAATATGTTTCAAAAATCTGCAGATACGTTATGCGGAACATCTGCCCTCTGTTCTGAAAAGCATCAATTGCACATTTCCGGGAAGAAAGAAAATTGGTGTCGTGGGACGAACTGGAAGTGGAAAATCAACCTTAATACAGGCCATTTTCAGGATTGTTGAACCTTGGGAAGGAAGCATCGTAATTGATGATTTGGATATATGCAAGATTGGTCTACATGACTTAAGGTTGAGGCTTAGCATCATTCCACAAGATCCCACAATGTTTGAAGGCACAGTTAGAGGAAACTTGGACCCACTAGAGCAACACTCCGACAAGGAAGTGTGGGAGGCTTTGGATAAATGTCAGCTTGGTCAGCTCGTGAGATCAAAGCAAGAGAAATTGCAAGCCTCAGTGGTTGAAAATGGAGAAAACTGGAGTGCAGGCCAAAGGCAACTATTTTGCCTTGGAAGGGCCTTACTGAAGAAGAGTAGCATACTTGTGCTGGATGAAGCAACGGCATCAGTTGATTCTGCAACAGATGGAGTGATACAGAAGATCATCGGTCAAGAATTCAAAGATAGAACTGTCGTCACAATAGCTCATCGAATCCACACTGTTATCGATAGCGATTTGGTTTTGGTTCTAAGTGATGGAAAAATCGCACAGTTCGATGCGCCATCGAAGTTACTTGAAAGAGAAGATTCCTTCTTTTCCAAACTCATAAGGGAGTACTCAAGAAGGTCACAAAGTTTCATTAGCTTGGCCACTCAAAATGGCCAATGA 3447 0.412 MIETITQRQWIFGARQAGLRLRVALISHIYKKGLNLSSKSRQRHSGGEIMNYMSVDVQRITDFMYYINVIWMLPVQVTLAVCILHTNLGLGSLAALAATLTVMGMNIPLTRIQKRYQSKIMEAKDNRMKATSEVLRNMKTLKLQAWDTEFQNRLEELRATESIWLWKSLRQGAFSAFIFWGSPTFISLVTFWVCMLMGIELTAGRVLSAFATFRMLQDPIFNLPDLLNVVAQGKVSVDRIASYLREEEVQHNAIEYVPRDHTQFDIVIEKGRFSWDSEPSNPTLDGIDLRVKRGMKVALCGTVGSGKSSLLSSILGEMYKQSGTVKIGGTKAYVPQSPWILTGNFRDNITFGKEYNSVKYEKTIEACALIKDFELFSCGDLTEIGERGINMSGGQKQRIQIARSVYQDADIYLFDDPFSAVDAHTGSHLFKECLMGVLREKTILYVTHQVEFLPAADLILVMQNGRIAQAGTFEQLLKQNIGFEVLVGAHNQALESILMVENSSRKTLNSAPEGESNDNSQSNSELSHTQHNIEQGSPPEINEKEGKLVQDEERERGSISREVYWTYLTTVKGGALVPLILLAQSSFQVLQVASNYWMAWVCPTSSDAKPTFKMDFILLVYMALSVGSAFCVLLRAILVAKAGLWTAQKLFINMLHSILRAPMSFFDSTPHGRILNRASTDQSVLDLEMATKLGWCAFSIIQILGTIAVMSQVAWQVFVIFIPVTAVCVWYQRYYTPTARELARLSQIQIAPILHHFAESLAGVASIRAFDQEGRFVYSNLELIDSYSKPWFHNVSAMEWLSYRLNLLSNFVFAFSLVLLVVLPEGIINPSIAGLAVTYGINLNVLQASVIWNICNAENKMISVERIIQYSNIKSEAALVIEDSRPPNNWPEIGTICFKNLQIRYAEHLPSVLKSINCTFPGRKKIGVVGRTGSGKSTLIQAIFRIVEPWEGSIVIDDLDICKIGLHDLRLRLSIIPQDPTMFEGTVRGNLDPLEQHSDKEVWEALDKCQLGQLVRSKQEKLQASVVENGENWSAGQRQLFCLGRALLKKSSILVLDEATASVDSATDGVIQKIIGQEFKDRTVVTIAHRIHTVIDSDLVLVLSDGKIAQFDAPSKLLEREDSFFSKLIREYSRRSQSFISLATQNGQ 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral616g00001 1148 FunFam ABC transporter C family member 3 879 1131 - -
Pral616g00001 1148 FunFam ABC transporter C family member 5 251 498 - -
Pral616g00001 1148 CDD ABC_6TM_ABCC_D1 1 240 IPR044746 GO:0140359
Pral616g00001 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 887 1126 IPR027417 -
Pral616g00001 1148 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 579 859 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral616g00001 1148 Pfam ABC transporter transmembrane region 15 215 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral616g00001 1148 Pfam ABC transporter transmembrane region 588 823 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral616g00001 1148 Gene3D - 264 495 IPR027417 -
Pral616g00001 1148 MobiDBLite consensus disorder prediction 505 537 - -
Pral616g00001 1148 CDD ABCC_MRP_domain2 894 1114 - -
Pral616g00001 1148 FunFam ABC transporter C family member 5 540 877 - -
Pral616g00001 1148 Pfam ABC transporter 913 1061 IPR003439 GO:0005524
Pral616g00001 1148 CDD ABCC_MRP_domain1 266 466 - -
Pral616g00001 1148 Gene3D - 878 1132 IPR027417 -
Pral616g00001 1148 MobiDBLite consensus disorder prediction 538 554 - -
Pral616g00001 1148 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 2 1133 - -
Pral616g00001 1148 SMART AAA_5 922 1107 IPR003593 GO:0016887
Pral616g00001 1148 SMART AAA_5 293 466 IPR003593 GO:0016887
Pral616g00001 1148 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 232 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Pral616g00001 1148 Coils Coil 113 133 - -
Pral616g00001 1148 MobiDBLite consensus disorder prediction 505 554 - -
Pral616g00001 1148 ProSitePatterns ABC transporters family signature. 391 405 IPR017871 GO:0005524|GO:0016887
Pral616g00001 1148 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 259 482 IPR027417 -
Pral616g00001 1148 CDD ABC_6TM_ABCC_D2 577 871 IPR044726 GO:0140359
Pral616g00001 1148 Pfam ABC transporter 284 418 IPR003439 GO:0005524
Pral616g00001 1148 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 262 489 IPR003439 GO:0005524
Pral616g00001 1148 SUPERFAMILY ABC transporter transmembrane region 577 876 IPR036640 GO:0005524|GO:0016020
Pral616g00001 1148 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 898 1130 IPR003439 GO:0005524
Pral616g00001 1148 SUPERFAMILY ABC transporter transmembrane region 8 248 IPR036640 GO:0005524|GO:0016020
Pral616g00001 1148 Gene3D ABC transporter type 1, transmembrane domain 4 249 IPR036640 GO:0005524|GO:0016020
Pral616g00001 1148 Gene3D ABC transporter type 1, transmembrane domain 541 877 IPR036640 GO:0005524|GO:0016020
Pral616g00001 1148 FunFam ABC transporter C family member 10 1 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral616g00001 Pral-Chr616 12610 27676 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral616g00001 249 524 Calmodulin-binding Proteins AT2G36910 27.241 9.51e-23 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral616g00001 - - gmx:100817486 1877.83