Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral615g00003 ATCCTGACTAACGGATTGCTGACGTTGTCTGTATTATTGGGTGAATTTCAGGTTGAGGTTTTGAGCAGGGTAAGACATCCAAGCCTTGTAACACTGATTGGAAGCTGCCCAGAATCTAGGTCACTTGTCTATGATTACCTTAATAATGGCAGCCTTGAGGACCATCTTGCCCGCAAAGAGAAGACTCCACTTCCTTGGCAAATTCGAATTTCCATTTCTGCTGATATATGCTCTGCTCTTATCTTCCTTCACTCCGGCAGGCCTTCTATAATCCATGGGAATTTGAAGCCCAGTAAAATTCTCCTTGATGTAAACTTTGTTGCCAAACTTTGTGATTTGGGCATTTCTTCTTTAGTCCAGCGCAGTGGGCATTCAGCTGACAGTAACACAACAGTTGACAAAGGAAATGAAAGTTTGGTGTATGTGGATCCAGAATTTCTTCTCACTGGGAAGCTCACACCAGAATCCGATGTGTATTCATTTGGAATCATATTGTTACAACTTTTAACTGGCAGGCCTCTTTCAGGAATAGTAAGGGATACAAAATGTGCATTGGAGAAGGAAAATCTCAAAGCGGTATTGGACACTTCAGCTGGAGAATGGCCACTTTATCAAGTCGAACAGCTAGCATATTTGGCATTGAGGTGTTCTGAGAAGACTCCGCTGAACCGGCCAGACCTTTTGTCAGAAATCTGGAGTGCCCTCGGACCATTACGAACTTCATGCAGTAATATGTCACTATTTTCTACTTCCAAGAAGCTTCACCGCCCTCCTTCTCACTTTGTCTGCCCCATATTTCAGGAGGTCATGAAAGATCCTTATATAGCTGCAGATGGCTTTACATATGAAGAAGACGCAATAAGAGGATGGTTGGATAGTGGTCACAACACCTCGCCAATGACAAACCTGAAACTTGAACACACCAACCTGGTGCCTAATTATGCATTACTTAGTGCGATTCAGGAGTGGAAGCACCTGCAATAA 984 0.4339 ILTNGLLTLSVLLGEFQVEVLSRVRHPSLVTLIGSCPESRSLVYDYLNNGSLEDHLARKEKTPLPWQIRISISADICSALIFLHSGRPSIIHGNLKPSKILLDVNFVAKLCDLGISSLVQRSGHSADSNTTVDKGNESLVYVDPEFLLTGKLTPESDVYSFGIILLQLLTGRPLSGIVRDTKCALEKENLKAVLDTSAGEWPLYQVEQLAYLALRCSEKTPLNRPDLLSEIWSALGPLRTSCSNMSLFSTSKKLHRPPSHFVCPIFQEVMKDPYIAADGFTYEEDAIRGWLDSGHNTSPMTNLKLEHTNLVPNYALLSAIQEWKHLQ 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral615g00003 327 ProSiteProfiles U-box domain profile. 256 327 IPR003613 GO:0004842|GO:0016567
Pral615g00003 327 SMART Ubox_2 260 323 IPR003613 GO:0004842|GO:0016567
Pral615g00003 327 Gene3D Transferase(Phosphotransferase) domain 1 9 256 - -
Pral615g00003 327 PANTHER OS02G0152300 PROTEIN 17 322 - -
Pral615g00003 327 Pfam Protein tyrosine and serine/threonine kinase 18 227 IPR001245 GO:0004672|GO:0006468
Pral615g00003 327 SUPERFAMILY RING/U-box 253 324 - -
Pral615g00003 327 CDD RING-Ubox_WDSUB1-like 258 313 - -
Pral615g00003 327 ProSiteProfiles Protein kinase domain profile. 1 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral615g00003 327 SUPERFAMILY Protein kinase-like (PK-like) 17 227 IPR011009 -
Pral615g00003 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 257 327 IPR013083 -
Pral615g00003 327 Pfam U-box domain 258 324 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral615g00003 Pral-Chr615 56425 58371 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral615g00003 15 325 U-box Gene Family AT3G49060 55.732 3.56e-118 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Pral615g00003 PK_Tyr_Ser-Thr 8e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral615g00003 - - pcin:129304798 570.852