Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral614g00011 ATGAATCCTCAAGCAGTCATAAGCAGATTCAGGAACTGGAAGAACATATTTGTCAAGAAAGAAGACTTTACAATGCAGGCTGAGAAGTATATAACACGAAATGGAACTGAAGTCTTAGAGCAACTCATTGCTAGCAAGAACATAGAGAAAAGTCTCAATGCAGAAACAAGAAAATCAGTTCCAACTACGGAGAAGAATGAGATCCTGAAGGCGAATTTTTATGTGAATCTTGATGGATGTACAAATAGAGGAAGGCTTCTCATGGAACAGAAAGACGCCAAAGATTTGGAGATGATTGAAAAAGAGCAAGTTCCTGAAGGCAAGCAAGTTAATAGCGCCTTGGAAAGACTCAAATCAAATGAAAGCATTTTATCTGCCATGGCGAAAACCGAAAAAATGGCAGCAGACACCGAACATGGAACATATAATCCTCAGATTTCTGCATCTGAGAATGTACAGAAAGAATGGACTTGTGCCATATGCCAGGTGACAATGCCTTCTGAAGCTAATTTGAATTCCCACCTGCAAGGAAGAAAGCATAAGGCTGCTTGTGAAGCACTGAATACAAAAACTAAAGGAATGCCGGTGACAGACACAGGAAGAGGAGCATCTTCTCAGGTTTCTGCATGTAAAGATGTACAGACGATGTGGACTTGTAAAATATGTCAATTGAGAATATTTTCTGAAGCTAGTTTGAATTCCCACCTGCAAGGAAGAAAGCATATGGCTGCTTGTGAAGCACTGAACGGGAAAACTAAAGGAACCGAAGTGACAGACACAGGAAGTGGAGCATCTTCTCAGGTTTCTGCATCTAAAGATGTACAGAAAATGTGGACTTGTAAAATATGTCAATTGAAAATATATTCTGAAGGTAGTTTGAATTCCCACCTGAAAGGAAAGAAGCATAAGGCTGCTTGTGAAGCACTGAACGCAAAAAGCCAGCTTGTTGCTGAGAAAGTTCCGGTGAAGAAGAATGATGAGTCCACTGGAGAAGAGGAGATGATAATCTATACGCCAAGTGCATTAGAACAGAATACCACAAACAGTCATCATCCAAAAATGGAGCATAAGAATGTTGAAACTATCAATATTAGTCAGCAGAATAAAAACAAAGACGTTGATGCCAATACCACCAAGGTGCAAGAATTGCAGAAGGACGTAGGAACATCGATTGGAATGAACAGTTCCAGATTAAGATGTGATATGTGCAATGTAAAATGCACTAGTGTAGGTGACTTGGCTTCTCACTTGCAAGGTAGCAAGCACTTGGCTCAAATTCAATTACTTACTGCCCATGGGCAATGGCCTTGTAGTCTAGTCATATAA 1326 0.4012 MNPQAVISRFRNWKNIFVKKEDFTMQAEKYITRNGTEVLEQLIASKNIEKSLNAETRKSVPTTEKNEILKANFYVNLDGCTNRGRLLMEQKDAKDLEMIEKEQVPEGKQVNSALERLKSNESILSAMAKTEKMAADTEHGTYNPQISASENVQKEWTCAICQVTMPSEANLNSHLQGRKHKAACEALNTKTKGMPVTDTGRGASSQVSACKDVQTMWTCKICQLRIFSEASLNSHLQGRKHMAACEALNGKTKGTEVTDTGSGASSQVSASKDVQKMWTCKICQLKIYSEGSLNSHLKGKKHKAACEALNAKSQLVAEKVPVKKNDESTGEEEMIIYTPSALEQNTTNSHHPKMEHKNVETINISQQNKNKDVDANTTKVQELQKDVGTSIGMNSSRLRCDMCNVKCTSVGDLASHLQGSKHLAQIQLLTAHGQWPCSLVI 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral614g00011 441 Pfam Zinc-finger of C2H2 type 399 422 - -
Pral614g00011 441 Pfam Zinc-finger of C2H2 type 217 241 - -
Pral614g00011 441 Pfam Zinc-finger of C2H2 type 156 180 - -
Pral614g00011 441 Pfam Zinc-finger of C2H2 type 278 302 - -
Pral614g00011 441 Gene3D Classic Zinc Finger 201 247 - -
Pral614g00011 441 Gene3D Classic Zinc Finger 261 308 - -
Pral614g00011 441 Gene3D Classic Zinc Finger 130 186 - -
Pral614g00011 441 Gene3D Classic Zinc Finger 373 428 - -
Pral614g00011 441 SMART c2h2final6 156 180 IPR013087 -
Pral614g00011 441 SMART c2h2final6 217 241 IPR013087 -
Pral614g00011 441 SMART c2h2final6 278 302 IPR013087 -
Pral614g00011 441 SMART c2h2final6 398 422 IPR013087 -
Pral614g00011 441 ProSitePatterns Zinc finger C2H2 type domain signature. 280 302 IPR013087 -
Pral614g00011 441 PANTHER OS06G0651300 PROTEIN-RELATED 253 434 - -
Pral614g00011 441 SUPERFAMILY beta-beta-alpha zinc fingers 262 313 IPR036236 -
Pral614g00011 441 SUPERFAMILY beta-beta-alpha zinc fingers 135 190 IPR036236 -
Pral614g00011 441 ProSitePatterns Zinc finger C2H2 type domain signature. 158 180 IPR013087 -
Pral614g00011 441 SMART ZnF_U1_5 153 187 IPR003604 GO:0003676|GO:0008270
Pral614g00011 441 SMART ZnF_U1_5 214 248 IPR003604 GO:0003676|GO:0008270
Pral614g00011 441 SMART ZnF_U1_5 275 309 IPR003604 GO:0003676|GO:0008270
Pral614g00011 441 SMART ZnF_U1_5 395 429 IPR003604 GO:0003676|GO:0008270
Pral614g00011 441 SUPERFAMILY beta-beta-alpha zinc fingers 394 431 IPR036236 -
Pral614g00011 441 SUPERFAMILY beta-beta-alpha zinc fingers 199 251 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral614g00011 Pral-Chr614 108793 111443 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral614g00011 157 426 C2H2 Transcription Factor Family AT5G61190 25.597 2.87e-12 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral614g00011 zf-met 8.2e-10 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral614g00011 - - pcin:129306216 399.053