Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral614g00003 ATGGGAAGAGGGAAGATTGCGATTCGAAGGATCGAGAATTCGACGAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCCAGAGAGCTATCAGTTCTTTGTGATGCCGAAGTTGGATTGATTGTCTTCTCCAGCACCGGCAAGCTTTATGACTTTGCAAGTACCAGCATGAAATCTGCTATTGAGCGATACAACAAGCTTAAGGAGGAACATCTGATGCTTATGAATCCTGCTTCAGAAGTCAAGCTTTGGCAGAGAGAAGTAGCAAGCCTGAGGCAACAACTACAGTACTTGCAAGATTATCACAGGCAACTGATGGGCGAAGAACTTTCTGGTTTGGGAATTAAAGAACTACAAAATCTGGAAAACCAACTAGAGATGAGTTTGAAGGGTGTCCGCATGAGGAAGGATCAAATTTTAAATGACGAGATTAAAGAACTACACCAAAAGGGAAATCTCGTTCATGAAGAAAATGTACAACTTTACAAAAAGATAGACATCATCCAAAAAGAAAATGCAGAACTGAGAAAGAAGGTTTATGAAGCACAAAGCATGAACGAAGAAAATGGGACATCCAATCCTTCATACCCTATAAGCAACGGGTATGATTTACATGCACCAATCAGCCTCCAGCTAAGCCAGCCACAGTCTCAGCACAACGAACCACCGACCAAAACCATGAAACTGGGATTACAGCTGCATAAGCCGAAGCCAGTCAACAATCAAGGTTGGTTGTCTGACAACAAGCTGTCAACAACCAGGCCCTGA 783 0.4278 MGRGKIAIRRIENSTSRQVTFSKRRNGLLKKARELSVLCDAEVGLIVFSSTGKLYDFASTSMKSAIERYNKLKEEHLMLMNPASEVKLWQREVASLRQQLQYLQDYHRQLMGEELSGLGIKELQNLENQLEMSLKGVRMRKDQILNDEIKELHQKGNLVHEENVQLYKKIDIIQKENAELRKKVYEAQSMNEENGTSNPSYPISNGYDLHAPISLQLSQPQSQHNEPPTKTMKLGLQLHKPKPVNNQGWLSDNKLSTTRP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral614g00003 260 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Pral614g00003 260 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 200 - -
Pral614g00003 260 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral614g00003 260 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral614g00003 260 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral614g00003 260 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral614g00003 260 Coils Coil 120 140 - -
Pral614g00003 260 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pral614g00003 260 Coils Coil 163 183 - -
Pral614g00003 260 MobiDBLite consensus disorder prediction 188 260 - -
Pral614g00003 260 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral614g00003 260 Gene3D - 13 88 IPR036879 GO:0003677|GO:0046983
Pral614g00003 260 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral614g00003 260 MobiDBLite consensus disorder prediction 244 260 - -
Pral614g00003 260 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral614g00003 260 Coils Coil 55 75 - -
Pral614g00003 260 MobiDBLite consensus disorder prediction 211 230 - -
Pral614g00003 260 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral614g00003 260 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral614g00003 260 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pral614g00003 260 MobiDBLite consensus disorder prediction 189 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral614g00003 Pral-Chr614 67644 78912 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral614g00003 1 224 MADS-box Gene Family AT2G22630 58.952 6.58e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral614g00003 K-box 9.5e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral614g00003 K09264 - tcc:18608170 379.407