Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral614g00002 ATGGGAAGAGGGAAGATTGCGATTCGAAGGATCGAGAATTCGACGAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAATGGATTGCTGAAGAAAGCCAGAGAGCTATCAGTTCTTTGTGATGCCGAAGTTGGATTGATTGTCTTCTCCAGCACCGGCAAGCTTTATGACTTTGCAAGTACCAGCATGAAATCTGCTATTGAGCGATACAACAAGCTTAAGGAGGAACATCTGATGCTTATGAATCCTGCTTCAGAAGTCAAGAGAGAAGTAGCAAGCCTGAGGCAACAACTACAGTACTTGCAAGATTATCACAGGCAACTGATGGGCGAAGAACTTTCTGGTTTGGGAATTAAAGAACTACAAAATCTGGAAAACCAACTAGAGATGAGTTTGAAGGGTGTCCGCATGAGGAAGGATCAAATTTTAAATGACGAGATTAAAGAACTACACCAAAAGGGAAATCTCGTTCATGAAGAAAATGTACAACTTTACAAAAAGATAGACATCATCCAAAAAGAAAATGCAGAACTGAGAAAGAAGGTTTATGAAGCACAAAGCATGAACGAAGAAAATGGGACATCCAATCCTTCATACCCTATAAGCAACGGGTATGATTTACATGCACCAATCAGCCTCCAGCTAAGCCAGCCACAGTCTCAGCACAACGAACCACCGACCAAAACCATGAAACTGGGGTACTCACTCAAACAGATAATATTACAGCTGCATAAGCCGAAGCCAGTCAACAATCAAGGTTGGTTGTCTGACAACAAGCTGTCAACAACCAGGCCCTGA 795 0.4239 MGRGKIAIRRIENSTSRQVTFSKRRNGLLKKARELSVLCDAEVGLIVFSSTGKLYDFASTSMKSAIERYNKLKEEHLMLMNPASEVKREVASLRQQLQYLQDYHRQLMGEELSGLGIKELQNLENQLEMSLKGVRMRKDQILNDEIKELHQKGNLVHEENVQLYKKIDIIQKENAELRKKVYEAQSMNEENGTSNPSYPISNGYDLHAPISLQLSQPQSQHNEPPTKTMKLGYSLKQIILQLHKPKPVNNQGWLSDNKLSTTRP 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral614g00002 264 Coils Coil 117 137 - -
Pral614g00002 264 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pral614g00002 264 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pral614g00002 264 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pral614g00002 264 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Pral614g00002 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 197 - -
Pral614g00002 264 Pfam K-box region 84 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral614g00002 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pral614g00002 264 Coils Coil 160 180 - -
Pral614g00002 264 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Pral614g00002 264 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pral614g00002 264 Coils Coil 55 75 - -
Pral614g00002 264 Gene3D - 13 90 IPR036879 GO:0003677|GO:0046983
Pral614g00002 264 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pral614g00002 264 CDD MADS_MEF2_like 2 77 IPR033896 GO:0000977|GO:0045944
Pral614g00002 264 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pral614g00002 264 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral614g00002 Pral-Chr614 67644 78912 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral614g00002 1 221 MADS-box Gene Family AT2G22630 58.079 6.42e-86 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pral614g00002 K-box 1.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral614g00002 K09264 - gmx:100808145 372.089