Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral612g00006 ATGGGAAGATCTCCTTTCAGTGATGAGAATGGTTTGAAGAAAGGACCTTGGACCCCTGAAGAAGATAACAAGCTTGTTCATTACATTCAGAAACATGGCCATGGAAGCTGGAGGTCTCTCCCCAAACTAGCTGGGCTTAACAGATGCGGCAAGAGTTGCAGGCTAAGATGGACGAACTACTTGAGACCAGACATAAAGAGAGGGAAGTTTTCCAAAGAAGAAGAAGAGAGAATTCTGAATCTGCATGCTATCCTGGGAAACAAATGGTCGGCAATTGCGAGGCACTTACCAGGTCGTACTGATAATGAAATAAAGAACTTCTGGAACACTCACCTGAAGAAGAAGCTGATTCAAATGGGTTACGATCCCATGACTCACCAACCACGAACTGATATCTTCTCTAGTCTCTCTCATCTCTTAGCTCTCGCCAACCTTAAGCAACTTCTGGATCATAATGCTTCCAGTCTTCAATTCCTGCAGCATCTTGTTCAACCTCGTACCAGTAGTCATCAAGCAAACACAAACGCTATGAACATCGACAGTTTCGCCCACTTGATGAATCCGTCACTTCATCAGTTAGACAACAACGTTGTCAATAATAATGACTCGTCCATGGCTTTTTCCCACATGCCTGAGTTAATCACTCATTCTTCTTCTTCTTCTACCTATCAGACGCCTCCATTTATTAGCAAACAGGACATGGTTCAAATCCCAGAATATTGTACAGTGAACAACAAGGAAGAGAGTGGTTCTCCCAATAATTCCACGTGGCTTCAGTCGTGTGTAAGCACGCCGTCTCCTTCTTTTGTTCAGGCGGAGACTAAGACGCCGGCGACGGCGACAGTGACAGTGACTAATAATTGCATGGCCGATAACTGCTCTCCGGCTTGCGATTTCGGAGAAGTTGTTGGTCTTTGGCCTGAGTCAGAGCTGTTTCTAGAAGACCCTTTATTTCATGAGATTAATGCCTAG 972 0.4475 MGRSPFSDENGLKKGPWTPEEDNKLVHYIQKHGHGSWRSLPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSKEEEERILNLHAILGNKWSAIARHLPGRTDNEIKNFWNTHLKKKLIQMGYDPMTHQPRTDIFSSLSHLLALANLKQLLDHNASSLQFLQHLVQPRTSSHQANTNAMNIDSFAHLMNPSLHQLDNNVVNNNDSSMAFSHMPELITHSSSSSTYQTPPFISKQDMVQIPEYCTVNNKEESGSPNNSTWLQSCVSTPSPSFVQAETKTPATATVTVTNNCMADNCSPACDFGEVVGLWPESELFLEDPLFHEINA 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral612g00006 323 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral612g00006 323 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Pral612g00006 323 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral612g00006 323 CDD SANT 69 112 IPR001005 -
Pral612g00006 323 CDD SANT 16 61 IPR001005 -
Pral612g00006 323 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Pral612g00006 323 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral612g00006 323 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral612g00006 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral612g00006 323 SMART sant 13 63 IPR001005 -
Pral612g00006 323 SMART sant 66 114 IPR001005 -
Pral612g00006 323 Gene3D - 69 131 - -
Pral612g00006 323 Gene3D - 11 67 - -
Pral612g00006 323 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral612g00006 323 FunFam Transcription factor MYB39 69 130 - -
Pral612g00006 323 FunFam MYB-related transcription factor 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral612g00006 Pral-Chr612 31540 32972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral612g00006 1 201 MYB Transcription Factor Family AT5G10280 61.644 1.33e-93 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral612g00006 Myb_DNA-binding 1.1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral612g00006 K09422 - qsu:112033310 335.495