Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6079g00006 ATGAAAATCCAGTGCGATGTGTGTGAGAAAGCTCCGGCAACGGTGATTTGTTGCGCCGACGAGGCTGCTTTATGTGCTAAATGCGACATTGAAGTTCATGCTGCCAACAAGCTAGCCAGCAAGCACCAGAGGCTTCTCCTTCAGTGCCTCTCTACCAAGCTTCCCACATGTGACATCTGCCAAGACAAGCCAGCTTTTATATTTTGTGTTGAAGACAGAGCGCTGTTCTGTGAAGCCTGTGATGAACCGATTCACTCAGCTGGCAGCCTCTCCGCAAACCACCAGCGCTTCCTTGCAACTGGTATCCGGGTGGCTTTGAGTTCTAATTGCTCCAAGGACAATGAAGAACGTCGCTTGGAGCCACCTAATCGGAGTGCTCAACAAGCTTCTGCAAAAGTTCCCACTCAGCCTCAGCAAGTCCCTACCTTCACTTCCTCTTGGGCTGTGGATGACTTGTTGGAATTCACTGACTTCGAATCACCTGACAAGAAAGAATCACTGGAGTTTGGAGAGCTGGAATGGTTGTCGGAGGTGGGTCTTTTTGGAGAACAGTTTCCTGGGGAGGCATTGGCTGCAGCCGAGGTCCCTCAGCTTCCAGTAACACAGACTAGCAATGTTACGTCATACAAACCCTCCAAGTCCTTTACGTCTCTCAAAAAGCCGAGGATTGAATTTGAAGACGATGATGAGCACTTCACTGTGCCTGATCTGGGTTGA 717 0.4979 MKIQCDVCEKAPATVICCADEAALCAKCDIEVHAANKLASKHQRLLLQCLSTKLPTCDICQDKPAFIFCVEDRALFCEACDEPIHSAGSLSANHQRFLATGIRVALSSNCSKDNEERRLEPPNRSAQQASAKVPTQPQQVPTFTSSWAVDDLLEFTDFESPDKKESLEFGELEWLSEVGLFGEQFPGEALAAAEVPQLPVTQTSNVTSYKPSKSFTSLKKPRIEFEDDDEHFTVPDLG 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6079g00006 238 MobiDBLite consensus disorder prediction 113 140 - -
Pral6079g00006 238 MobiDBLite consensus disorder prediction 123 140 - -
Pral6079g00006 238 CDD Bbox1_BBX-like 5 47 - -
Pral6079g00006 238 SMART bboxneu5 4 47 IPR000315 GO:0008270
Pral6079g00006 238 SMART bboxneu5 52 99 IPR000315 GO:0008270
Pral6079g00006 238 Gene3D Classic Zinc Finger 1 92 - -
Pral6079g00006 238 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Pral6079g00006 238 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pral6079g00006 238 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Pral6079g00006 238 CDD Bbox1_BBX-like 57 98 - -
Pral6079g00006 238 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6079g00006 Pral-Chr6079 14991 17150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6079g00006 1 163 Orphan Transcription Factor Family AT1G06040 65.294 2.93e-69 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pral6079g00006 zf-B_box 6.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6079g00006 - - gmx:100797515 406.757