Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6078g00002 ATGGAGCAAACTACAGGAGGTTTCACTGGATTCAATCTCTCTGCTGCTGGTGAACGCGATCAGGCAACACTTGAATCCATTCAATTCAACGAGGAAATCGAGCGAATCATAGCCCCAGCCCCAGAAAACATTAGCTCGTTCACTGCACTTCTCGGACTACCACCAGCGCAGGCCAAGGAGATCCTCCATTCGCCCAACTGCGACGGAGTCACCGCCGCGGCTTTCCCCACCTACGGGGAACAACCCTTGTGCCATATCAACGATCAGAAACCCCACATACTTCACTCTTCCAGTGGCACTTCAACACTCCCTTCTAACAGTGCTTTGATCGAGCGCGTTGCCAAGTTTTCCGTGTTTGCCGAAGAGAACTCGCCACCGGAGGAGCCCAACTTGGCCCCGCTTAGTCCAGGAGCAAATTTAAACAGAGTGAAGCATGAACCCCCGGAAACCGATTCAAATCCTAAGCCAACCCCTGTTATCCCTTCTAACCCCTCGATTGAGCACAAGAACGAAAGGGCCGCAAAGAGGAAGGAACGAGAGAAGAAGGATAAAGAGTCCTCGAAGAAGAGTAAAAGCGTCGTCGACGAAACATCCGGAGACCGTGATAAACTTCCATACGTCCATGTTCGAGCTCGTCGCGGCCAAGCTACAGACAGCCATAGCTTAGCAGAAAGGGCCAGGAGAGAGAAAATCAATGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCGGCTTCTCCACAGATTTCAGGAACAGCATTGGTTCTGGATGAAATCATCAACCATGTTCAATCTCTTCAACGCCAAGTGGAGTTCTTGTCAATGAAACTGGCAGCAGTTAACCCAAGAATCGATCTTGATCTTGACAGCATATTGGCTACGGAAGGTGCATCTCGAGCAGACTGCAACTTTCCCGACATGGTTACACCTCCAGTGTGGCAGGAAGTTCTAGTCAATGGAAACAGACAGCAATATCAACATCAGTGGCAATTCGATGCATTTAACCAACCAATTTGGGGGAGGGAGGAAGAGAACCGTAATTTCATGACCCCAGAAAGCTCTCTTTTGAGTTATGACTCGTTGGCAAATTCAGCACCTCTGCACTCAAATCATTTGGAGATGGAGCTGTGA 1128 0.4947 MEQTTGGFTGFNLSAAGERDQATLESIQFNEEIERIIAPAPENISSFTALLGLPPAQAKEILHSPNCDGVTAAAFPTYGEQPLCHINDQKPHILHSSSGTSTLPSNSALIERVAKFSVFAEENSPPEEPNLAPLSPGANLNRVKHEPPETDSNPKPTPVIPSNPSIEHKNERAAKRKEREKKDKESSKKSKSVVDETSGDRDKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPASPQISGTALVLDEIINHVQSLQRQVEFLSMKLAAVNPRIDLDLDSILATEGASRADCNFPDMVTPPVWQEVLVNGNRQQYQHQWQFDAFNQPIWGREEENRNFMTPESSLLSYDSLANSAPLHSNHLEMEL 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6078g00002 375 MobiDBLite consensus disorder prediction 168 205 - -
Pral6078g00002 375 SMART finulus 221 271 IPR011598 GO:0046983
Pral6078g00002 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 213 283 IPR036638 GO:0046983
Pral6078g00002 375 Coils Coil 255 275 - -
Pral6078g00002 375 Gene3D - 212 285 IPR036638 GO:0046983
Pral6078g00002 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 215 265 IPR011598 GO:0046983
Pral6078g00002 375 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 161 348 IPR024097 GO:0006355
Pral6078g00002 375 Pfam Helix-loop-helix DNA-binding domain 219 266 IPR011598 GO:0046983
Pral6078g00002 375 MobiDBLite consensus disorder prediction 121 205 - -
Pral6078g00002 375 CDD bHLH_AtBPE_like 205 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6078g00002 Pral-Chr6078 7989 13191 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6078g00002 5 375 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 47.118 1.06e-93 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral6078g00002 HLH 1.8e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6078g00002 - - pcin:129286268 516.924