Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6078g00001 ATGGAATCAAATAATCCATTCGCCACAGGTTTCTCGTTCTACACTGCGACAGCTTCCTCTTCTGAGGGCTGCTTCAGCCACAGTAACTTCACCAGCCAGCCAATGTTTTCTGATCAGCCCCCTCCAAATCAAAGGAATGACGACAAAAGAAAACAAACTCGCAGCAACGGGAGCGAAGAAAATAATAATAACAATAGGAATGAAAAGCGTGGTCGAAGTAATAATCAACGTAAAACTTCTGAGTACCTGGGAGTTAGCAGGCAAGCAGGTCGTTATGAAGCATTTATATGGGACAGCAGCGTTCTTAAACCAGGAGACAAAAGGAAATCTGCAGGTGGGTTCGAGAATGAAATAGACGCAGCAAAAGCGCGCGACTTGTTTGCCATCAAAATCTGGGGCAATTCCGCTCGTACAAATTTTCCTCCTAGTACGTACGGGAAAGAGCTCCTAGAAATGAAGGATATGAGCAGAGAGGAGTGCATTGCTGCTATTAGAAAGATGAGTAATGATGATAGGATGAAGAGGATGGCTAGTAAGGGCCTCTCAGTTTATCGTGGAGTCTACAGGATCCCAGAGCAGAATCGATGGCAAGCCAGGGTAGGTAAAGGCAAAAACCTACGAGGCCTTTACGTGGGCACCTTTGATTCGGAGGAGGAGGCGGCCAGAGCATTTGATATAGCGACAATAAGACTGAAGGGCCCGACCGCCGCCACAAACTTAAATTTCGACCGGCAATCTTATGATATCGAAAGCATTCTTAAAAGTACTAAGATTCCAATCGGAAAGGGTGCTTCCAAGTTGATCAAGAAATGCACAGCGGATGAGATTCTTTCGCGCATCACTGACAACAATCCAGACCCACCTTCGACCAACTTCTTAGAACAGTATCATCTGATGAACCCTCACTTCGTGAACACTGACCCTGTTGTCTCTTGGGAAGTTGCTGATTCAGTGAATGAGTTTGGAGTTCCGATTGGCGATCCATTCGGAGAACAAAACCAGACGGTGGCGAATAGCGAAACGTTTGTGTATGGGGATAGTAATGACCCGATGAGATTCCGACCAGATGGGTTTTCGGAGTTTCCTATAGAGGTGGAAGACAATACAGAATCTCTATGGAATGAAGTGTATGGTGAATCTCTAATGGACCATTTGCTGAGCGCAAGTGATTCATTGAATGAGTTTGAGAAAGGTCTTGATTCTATGGCGGATATCGACTGGATTTTCGCTGAGGAGGAGCCTCAAGAACCTGCTGGTGGGATCAACCAGACCACTAAATGA 1281 0.4575 MESNNPFATGFSFYTATASSSEGCFSHSNFTSQPMFSDQPPPNQRNDDKRKQTRSNGSEENNNNNRNEKRGRSNNQRKTSEYLGVSRQAGRYEAFIWDSSVLKPGDKRKSAGGFENEIDAAKARDLFAIKIWGNSARTNFPPSTYGKELLEMKDMSREECIAAIRKMSNDDRMKRMASKGLSVYRGVYRIPEQNRWQARVGKGKNLRGLYVGTFDSEEEAARAFDIATIRLKGPTAATNLNFDRQSYDIESILKSTKIPIGKGASKLIKKCTADEILSRITDNNPDPPSTNFLEQYHLMNPHFVNTDPVVSWEVADSVNEFGVPIGDPFGEQNQTVANSETFVYGDSNDPMRFRPDGFSEFPIEVEDNTESLWNEVYGESLMDHLLSASDSLNEFEKGLDSMADIDWIFAEEEPQEPAGGINQTTK 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6078g00001 426 MobiDBLite consensus disorder prediction 21 84 - -
Pral6078g00001 426 SUPERFAMILY DNA-binding domain 82 143 IPR016177 GO:0003677
Pral6078g00001 426 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 45 264 - -
Pral6078g00001 426 MobiDBLite consensus disorder prediction 21 42 - -
Pral6078g00001 426 CDD AP2 80 143 IPR001471 GO:0003700|GO:0006355
Pral6078g00001 426 ProSiteProfiles AP2/ERF domain profile. 183 243 IPR001471 GO:0003700|GO:0006355
Pral6078g00001 426 SMART rav1_2 81 147 IPR001471 GO:0003700|GO:0006355
Pral6078g00001 426 SMART rav1_2 183 247 IPR001471 GO:0003700|GO:0006355
Pral6078g00001 426 CDD AP2 182 239 IPR001471 GO:0003700|GO:0006355
Pral6078g00001 426 Pfam AP2 domain 182 233 IPR001471 GO:0003700|GO:0006355
Pral6078g00001 426 SUPERFAMILY DNA-binding domain 182 242 IPR016177 GO:0003677
Pral6078g00001 426 Gene3D AP2/ERF domain 183 243 IPR036955 GO:0003700|GO:0006355
Pral6078g00001 426 Gene3D AP2/ERF domain 81 142 IPR036955 GO:0003700|GO:0006355
Pral6078g00001 426 ProSiteProfiles AP2/ERF domain profile. 68 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6078g00001 Pral-Chr6078 3609 5998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6078g00001 77 275 AP2-EREBP Transcription Factor Family AT3G20840 46.341 7.42e-52 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral6078g00001 AP2 2.5e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6078g00001 K09285 - jre:108986079 192.971