Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pral6077g00002 | ATGGATTGGGATTGGAGCATAAGACCTTCTGTTCCTCAAGCGGAGTCCTCCTTTGGCTTCCTCTGTAACTTTAACTACACACCATATCCAGGAATGGAAGTGAGACATCCAGCAATGAGAGAGAGTGAGAGACAAGGGTTGGCTCCGGGAATGGACAGAGTCAACTACGGAAAGCAAGAACAGAAGAAGAAGAAGCGATTAACGAGCAAGCAGCTTGAGTCATTGGAGAAGAGTTTCGAGAAGGAGAGGAAATTGGACGCAGATAGGAAGATGAAGCTTTCGAAGGAGTTAGGGCTTCAGCCTCGCCAAGTTGCGGTTTGGTTCCAAAACAGGAGGGCTAGGTGGAAGGCAAAGCAGCTTGAGCACTTGTATGATGCTCTCAAACAGGATTTTGATGCCATCTACAAGGAAAGACAGAAGCTTCAAGAAGAGGTTATGATATTAAAAGCCATGCTGAAAAAGCAAGAATCTTCTAGGACGCAGGCATCTGCAGATTATCTAGAAATCTGCGGAAGAAAGTAA | 522 | 0.4559 | MDWDWSIRPSVPQAESSFGFLCNFNYTPYPGMEVRHPAMRESERQGLAPGMDRVNYGKQEQKKKKRLTSKQLESLEKSFEKERKLDADRKMKLSKELGLQPRQVAVWFQNRRARWKAKQLEHLYDALKQDFDAIYKERQKLQEEVMILKAMLKKQESSRTQASADYLEICGRK | 173 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pral6077g00002 | 173 | CDD | homeodomain | 62 | 119 | IPR001356 | GO:0003677 | |
Pral6077g00002 | 173 | ProSiteProfiles | 'Homeobox' domain profile. | 58 | 118 | IPR001356 | GO:0003677 | |
Pral6077g00002 | 173 | Coils | Coil | 110 | 158 | - | - | |
Pral6077g00002 | 173 | SMART | HOX_1 | 61 | 122 | IPR001356 | GO:0003677 | |
Pral6077g00002 | 173 | MobiDBLite | consensus disorder prediction | 40 | 75 | - | - | |
Pral6077g00002 | 173 | ProSitePatterns | 'Homeobox' domain signature. | 93 | 116 | IPR017970 | GO:0000981|GO:0006355 | |
Pral6077g00002 | 173 | SUPERFAMILY | Homeodomain-like | 51 | 120 | IPR009057 | - | |
Pral6077g00002 | 173 | PRINTS | Lambda-repressor HTH signature | 98 | 114 | IPR000047 | GO:0003677 | |
Pral6077g00002 | 173 | PRINTS | Lambda-repressor HTH signature | 89 | 98 | IPR000047 | GO:0003677 | |
Pral6077g00002 | 173 | Gene3D | - | 55 | 124 | - | - | |
Pral6077g00002 | 173 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN | 56 | 158 | IPR045224 | GO:0003700 | |
Pral6077g00002 | 173 | Pfam | Homeodomain | 62 | 116 | IPR001356 | GO:0003677 | |
Pral6077g00002 | 173 | MobiDBLite | consensus disorder prediction | 56 | 75 | - | - | |
Pral6077g00002 | 173 | Coils | Coil | 58 | 78 | - | - | |
Pral6077g00002 | 173 | Pfam | Homeobox associated leucine zipper | 118 | 152 | IPR003106 | GO:0006355|GO:0043565 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pral6077g00002 | Pral-Chr6077 | 12072 | 13787 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pral6077g00002 | 9 | 148 | Homeobox Transcription Factor Family | AT5G03790 | 52.740 | 3.25e-44 | 143 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | HB-HD-ZIP | Pral6077g00002 | Homeodomain | 1.5e-18 | CL0123 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pral6077g00002 | - | - | pcin:129303220 | 261.151 |