Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6066g00013 ATGGTGAAACCTCACTTGAGTTTCGGGCTTTCTTTTCTATGTCGTATCCTTTTGATTCTTTCCATGGTCTTGTTGGCCAAGTCTCAGGACGCAACGGTTATGACCATTCTCAAGAACTCGATCAAGGGTCGAGCACTCCAATGGTCCGACCCGGATGTCTGCAAATGGTCTCACGTTCAATGCAATTCTGGGAAACGGGTCACGGCAATTCAGATTGGGAACTTGAACCTGCAAGGGTCATTGCCAAAAGAACTCTCCCAGCTCACAGAATTACAGCGTTTCGAGTGCCAATCAAACAGTCTTTCAGGGGCATTTCCGTCATTAGCCAGTTCCCTGCAACACCTTTACATTTCAGACAACGGCTTCACCTCTATGCCTTCAGATTTCTTCAAGGGCATGTCGACGTTAGAAGAAGTAAGAATCGACAATAACCCTTTTCCTCCGTGGCAAATTCCAGACATACTCAAGGAGTGCGTAGCATTACAAACATTATCGGCGCAAAATGTTTCTTTTTTCGGAGAAATTCCAGATTTTTTCGGCAAAGATGGTCCATTCCCAGGTTTGACTAAATTGTCCCTGTGTTTCAATCAACTCGTAGGTGGGTTACCTTCGAGCTTCTCAGGTAGTTCGATAGAGCTACTGTGGGTGAATGGACAAAAGAGTACTTCTAAACTTAATGGCACGCTTGCGGTGTTACAGAACATGACTTCATTGAAGCAGATTTGGGTTCATGGTAATTCCTTCACTGGTCCTATCCCAGACCTGTCGCACCATGATCAATTGTGGGATGTGAGTTTGAGGGATAACCAGTTAACTGGTGTTGTTCCGTCGTCTCTTATGTCTCTTCCTAGCTTGCAAGTCGTGAATTTAACTAATAATTATCTTCAAGGACCGATGCCTGCGTTTAAATCAGGAGTACGTGCCGATATGCAGGGAATAAATCAGTTTTGCACGACCAAGCCTGGTCAGCCATGTAGTTCTTTGGTGAATGCTTTATTATCTGTGGTTGAACCGTTGGGTTATCCCTTGAAGTTTGCTCAAAATTGGAAGGGCAATGATCCTTGTGCTGGTAACTGGATAGGGATCGTTTGCGCAGGTAGAAATATTACGGTTGTGAATTTTCAGAGCATGGGCCTTTCTGGGACTATTTCTCCTAATTTTTCCAGCCTCACATCTGTAAAAAGGTTGCTTCTTGCTAACAATAATCTCACTGGCACTATACCTCGGGAGCTTACAAGCATGCCTCTTTTGCAAGAGCTGGATATCTCGAATAATCATATATATGGTCAGGTGCCAAAATTTCGGGAAGATGTGATTCTTAAATCAGGTGGGAATCCGGATATTGGAAAGGATAGGCCCACTCCTGCGGGACCCGACTCGGATAATACTGCAGGTACTGGTAAGAAACATCATTCAACAGTCATTATTATCATTGTTGTGGTGGGGCTTGTTGTTTTACTTGGTGTGGTAGTTGGGGGGCTCGTTTGGTTCAATAGAAAAAGGAAGCGTTCAAGCAAAACACAAGGCCAGAATGGCGTAGTGATACATCCTCGGCATTCTGGAGACAGAAATCACTTGAAAATCAGTGTTGTTGGTGCTGGAACCGGCGCTAATGGAGGAGGAACTGATGGACGGATTACCAGTACTAGTAATGCAGCTGGTGATATTCATGCCGTGGAAGCTGGTGGTATGGTAATTTCAATTCAAGTTTTAAGAGAAGCTACCAACAACTTCAGTAGAGAGAACATACTGGGGAAGGGCGGTTTTGGCACCGTGTACAAAGGAGAATTGCATGATGGGACAAAGATTGCGGTGAAAAGAATGGAATCTGGAATTGAGGGTGAGAAGGGGCTGAGTGAATTCAAAGCTGAAATCACTGTACTCACTAAGGTTCGTCATAAGCATTTGGTTGCTCTCATGGGGTATTGCTTGGATGGAAATGAGAGGCTTCTTGTGTATGAGTACATGCCTCAAGGAACCCTGAGCAGGCATTTGTTCAACTGGAAAGATGAAGGGTTAAAGCCACTGGAATGGACAAGAAGACTTATCATTGCCTTGGATGTTGCTAGAGGAGTTGAATATCTTCATGGTTTGGCCCAACAAACTTTCATTCACAGGGATCTTAAACCATCAAACATCCTGCTTGGTGATGATATGCGAGCTAAAGTGTCTGATTTTGGATTGGTTCGTCTTGCTCCAGAAGGAAAAGCCTCATTTGAGACCAGACTTGCTGGAACTTTTGGCTATTTGGCACCAGAATATGCAGTAACTGGACGAGTGACGACGAAGGTTGATGTATATAGTTTCGGAGTGATTCTTATGGAGATGATAACTGGTCGGAAAGCACTCGATGACAGCCAATCTGAGGAGAATGTCCACCTTGTGACATGGTTTCGAAGAATGACGCTGGCGAAGGACACATTCCGAAAGGCCATTGATCCAGAAATAGATGTGAATGAAAAAACTCTACCCAGTATCAACACTGTTGCGGAGCTGGCCGGCCATTGCTGCGCAAGGGAGCCCCACCAGAGGCCGGACATGGGCCATGCCGTGAACATGCTGGCGCCTCTCGTGGAGGTCTGGAAGCCTGCAGAATCAAGTTCTGATGACATTGGTGGGATTGACCTTGACATGGACCTACCACAAGCTCTTAAAAAATGGCAGGCGTTTGAAGGAATGAGCTCCACCGCCATGCCCATGGATGCTACTTCTTCATCCGTGGTTTCCAGTGCAGATAGTACTCAGTCTAGCATACCCCCAAGGCCATTTGGACTTGGAGCTTCTTTCACTTCCTCAGATGGAAGATGA 2808 0.4548 MVKPHLSFGLSFLCRILLILSMVLLAKSQDATVMTILKNSIKGRVXLQWSDPDVCKWSHVQCNSGKRVTAIQIGNLNLQGSLPKELSQLTELQRFECQSNSLSGAFPSLASSLQHLYISDNGFTSMPSDFFKGMSTLEEVRIDNNPFPPWQIPDILKECVALQTLSAQNVSFFGEIPDFFGKDGPFPGLTKLSLCFNQLVGGLPSSFSGSSIELLWVNGQKSTSKLNGTLAVLQNMTSLKQIWVHGNSFTGPIPDLSHHDQLWDVSLRDNQLTGVVPSSLMSLPSLQVVNLTNNYLQGPMPAFKSGVRADMQGINQFCTTKPGQPCSSLVNALLSVVEPLGYPLKFAQNWKGNDPCAGNWIGIVCAGRNITVVNFQSMGLSGTISPNFSSLTSVKRLLLANNNLTGTIPRELTSMPLLQELDISNNHIYGQVPKFREDVILKSGGNPDIGKDRPTPAGPDSDNTAGTGKKHHSTVIIIIVVVGLVVLLGVVVGGLVWFNRKRKRSSKTQGQNGVVIHPRHSGDRNHLKISVVGAGTGANGGGTDGRITSTSNAAGDIHAVEAGGMVISIQVLREATNNFSRENILGKGGFGTVYKGELHDGTKIAVKRMESGIEGEKGLSEFKAEITVLTKVRHKHLVALMGYCLDGNERLLVYEYMPQGTLSRHLFNWKDEGLKPLEWTRRLIIALDVARGVEYLHGLAQQTFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGKASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSFGVILMEMITGRKALDDSQSEENVHLVTWFRRMTLAKDTFRKAIDPEIDVNEKTLPSINTVAELAGHCCAREPHQRPDMGHAVNMLAPLVEVWKPAESSSDDIGGIDLDMDLPQALKKWQAFEGMSSTAMPMDATSSSVVSSADSTQSSIPPRPFGLGASFTSSDGR 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6066g00013 936 Gene3D Ribonuclease Inhibitor 328 453 IPR032675 -
Pral6066g00013 936 PANTHER OSJNBA0070M12.3 PROTEIN 13 936 - -
Pral6066g00013 936 FunFam Receptor-like kinase TMK4 28 323 - -
Pral6066g00013 936 Pfam Leucine rich repeat 387 428 IPR001611 GO:0005515
Pral6066g00013 936 FunFam Leucine-rich repeat receptor-like kinase 328 452 - -
Pral6066g00013 936 ProSitePatterns Protein kinases ATP-binding region signature. 585 607 IPR017441 GO:0005524
Pral6066g00013 936 CDD STKc_IRAK 585 858 - -
Pral6066g00013 936 Gene3D Phosphorylase Kinase; domain 1 543 656 - -
Pral6066g00013 936 Pfam Protein kinase domain 580 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral6066g00013 936 SUPERFAMILY L domain-like 35 435 - -
Pral6066g00013 936 SMART serkin_6 579 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral6066g00013 936 MobiDBLite consensus disorder prediction 441 467 - -
Pral6066g00013 936 Pfam Leucine rich repeat N-terminal domain 29 63 IPR013210 -
Pral6066g00013 936 Pfam Leucine rich repeat N-terminal domain 331 365 IPR013210 -
Pral6066g00013 936 MobiDBLite consensus disorder prediction 899 922 - -
Pral6066g00013 936 MobiDBLite consensus disorder prediction 899 936 - -
Pral6066g00013 936 SUPERFAMILY Protein kinase-like (PK-like) 562 864 IPR011009 -
Pral6066g00013 936 Gene3D Transferase(Phosphotransferase) domain 1 657 872 - -
Pral6066g00013 936 Gene3D Ribonuclease Inhibitor 27 323 IPR032675 -
Pral6066g00013 936 ProSitePatterns Serine/Threonine protein kinases active-site signature. 704 716 IPR008271 GO:0004672|GO:0006468
Pral6066g00013 936 ProSiteProfiles Protein kinase domain profile. 579 859 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral6066g00013 936 FunFam receptor protein kinase TMK1 542 656 - -
Pral6066g00013 936 FunFam receptor protein kinase TMK1 657 874 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6066g00013 Pral-Chr6066 79631 83117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6066g00013 68 861 Receptor kinase-like Gene Family AT5G07280 30.144 1.39e-80 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Pral6066g00013 Pkinase 6.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6066g00013 K00924 - gmx:100776064 1213.75