Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6066g00003 ATGATTAGAGGGAAAGATCTTCCTAATGGTCTTGACTCTGATGGGGAGAACTCTCGGAGCAAGCTGTCAAAGCCCAATTTTGACCGTGGCAAGGAGAACCCTGAAGAGAAATTAGGTTATCCGGGAAAGGGTGCGTATTTTCTGAAGGATTCAGAGGCGGGTAGTGATGGAATTCTATTGAAACCCTCTAAAGTCGGGACTTCGGCCTTGCAAGAGCTGACCCTCAGCTACCTTTGTGATAAGGAGATTCCTGGTAAAAGCTTGCTGAGTTCCTTAGAAAAAGTCAGTTGCAAAGGCAAAGAAGTTATCATCTCGGAGGATTCAAATCGGGATGAGAAATGGGTCGAACGGGATTTTCTGAATTTGAGCGAAACCAGGGAGAATTCTTCAAAGCGATCGGTTGAAGAAGAGGTTGTGAGGGAAAATAAGGACAAGAAGCAGAAGCTGGAGACGCTTAATCTCTCTCTTGCCTTGCCTGATGTCTCCCTTTCTCTTACGGCGTCAAACGCCCTGCAAAACGGTGATCAGCCGGTGAGGCCAAGGCCTAGCAAACCGTCAGCGACTACGTATTCAAATGATCATACAGCGGCTTCTCTATCTTACTCGTATTCCCATCCCTTCTCGCACAACCCAAGTTGCTCGCTTACCCGTAATTCTACAGATTTTGATTATTCCGTTAGCAAAGATGATCATATTTGGAACTGCGGAGAGGGGACGAATGGGTCAGTGCATAGTCGGTTCAAGCCCATAGGAGATGGGGTTGCCTTGTCTAATCATGGTGGTGGTGGGTATAATTCGACCATGCAGGGTAATAATAGTCAGTATAAAACTACAAGTTCAGATAACCATTCTTTTTTTCCGTCGGAATTACCTGCCAGGCCAAGATTTGAAGCTCAGTCAGGGGACTCGAGAGGAAGGAATTCTGAGAATCTGAGAGTATTGGAAGGTTTAGATGGTGGGAAAGTAAGGAAGCTTTCTAGACCAGAGAAAATTCTCAGAGAGATCGTGTCGGAGTCTGTCCCAACCATGGCTGCTCAGTTTCAAGAGCTTACTGATGAAGTGATTGCATCGACGAAGGAATACTTAAAGAATCTCATTGAGATGCCCGAGAAGAAAGAGGAAATGGTCAACCTTCAAAATCGGCTTGAGCGAAGATCTGACTTTACTAAGGAGACTCTTTCGAAGTGCCACAAAGGGCAACTTGAGATTTTAGTTGCTGTCAAGATGGGGCTTGCAAGCTTCTTATCTGGCAAAGTCCCCTTCTGTGAGATGGTAGAGATTTTCTTGCATATGAGATGTAGAAATGTGAACTGTAAGCGCGTGCTGCCGGTTGATGACTGTGACTGCGAGATTTGTTCTGGAAATAAAGGATTTTGCAGTTCTTGCATGTGTCCTGTCTGTCTGAACTTTGATTGTGCAAACAACACATGCAGTTGGGTTGGTTGTGATGTTTGTTTCCACTGGTGCCATGCTGCCTGCGGCATTAAGAGGAATCTTATCAAACCTGGGCCTAGCTTAAAAGGGCCATCAGGGACCACTGAGATGCAGTTTCATTGCAGTGGATGTGGACATCCTTCAGAAATGTTTGGCTTTGTTAGAGATGTGTTCGTATTTTGTGCAAAGGATTGGGGTCTAGAAACCCTGGTGAAAGAACTTGACTGTGTAAGGAGGATCTTCAAAGGAAGTGAAGATCGCAAAGGGAAGGAATTGCATGTCAAAACTGATGACATGCTCTTTAAGCTTCAAACTAAAACGGTGTCTCCTTTGGATGCCTGCAATTACATCCTACAATTTTTCAATTATGCAGATGGCATGTCAGACTTTCCTGCTTCCGGTATATCTTCAAAGGATTTGTCAGCATCTCAAGCTAATCTTAGAAAGGAAGCAACATCTCTTTCACAATCTAATTCTCTAATGTCAAAATATACTTATAACTCGAGCTATTCAAGGTCACAATGTGATGCTCTGTCAAATGATCTTCATCAGAAAGATATCAAAGCTTCCATCTTAAATGAATTGAAAAGTGAGAGTGAGTTCCAGCTGGGGGCCCTGTTAAGAAAAGGTGGGCTTGATAGCTTGGAGAGCATTGTGAGGATTAAGGAAGCGGAGGCCAGAATGTTCCAAACCAAGGCAGATGAAGCCCGGAGAGAAGCTGAAGGGTTCCAGAGGATGGTGAGGACGAAAATTGCGCAGATGGAAGAAGAGTATGCTGAAAGGCTTGCCAAGCTCTCTCTCCAAGAGACTGAGGAAACGCGGAGGAAGAAATTGGAGGAATTGAAGGTCTTAGAAAATTCCCATTGTGATTACTTTAAAATGAAAATGAGAATGCAAGCTGAGATTGCCGGTTTGCTGGAGAGAATGGAGGCAACGAAGCAGCAATGGGTTTAA 2388 0.4443 MIRGKDLPNGLDSDGENSRSKLSKPNFDRGKENPEEKLGYPGKGAYFLKDSEAGSDGILLKPSKVGTSALQELTLSYLCDKEIPGKSLLSSLEKVSCKGKEVIISEDSNRDEKWVERDFLNLSETRENSSKRSVEEEVVRENKDKKQKLETLNLSLALPDVSLSLTASNALQNGDQPVRPRPSKPSATTYSNDHTAASLSYSYSHPFSHNPSCSLTRNSTDFDYSVSKDDHIWNCGEGTNGSVHSRFKPIGDGVALSNHGGGGYNSTMQGNNSQYKTTSSDNHSFFPSELPARPRFEAQSGDSRGRNSENLRVLEGLDGGKVRKLSRPEKILREIVSESVPTMAAQFQELTDEVIASTKEYLKNLIEMPEKKEEMVNLQNRLERRSDFTKETLSKCHKGQLEILVAVKMGLASFLSGKVPFCEMVEIFLHMRCRNVNCKRVLPVDDCDCEICSGNKGFCSSCMCPVCLNFDCANNTCSWVGCDVCFHWCHAACGIKRNLIKPGPSLKGPSGTTEMQFHCSGCGHPSEMFGFVRDVFVFCAKDWGLETLVKELDCVRRIFKGSEDRKGKELHVKTDDMLFKLQTKTVSPLDACNYILQFFNYADGMSDFPASGISSKDLSASQANLRKEATSLSQSNSLMSKYTYNSSYSRSQCDALSNDLHQKDIKASILNELKSESEFQLGALLRKGGLDSLESIVRIKEAEARMFQTKADEARREAEGFQRMVRTKIAQMEEEYAERLAKLSLQETEETRRKKLEELKVLENSHCDYFKMKMRMQAEIAGLLERMEATKQQWV 795
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6066g00003 795 Coils Coil 729 765 - -
Pral6066g00003 795 CDD PHD_OBE1_like 463 522 IPR047578 -
Pral6066g00003 795 MobiDBLite consensus disorder prediction 1 38 - -
Pral6066g00003 795 Pfam PHD - plant homeodomain finger protein 433 557 IPR032881 -
Pral6066g00003 795 Coils Coil 773 793 - -
Pral6066g00003 795 MobiDBLite consensus disorder prediction 169 192 - -
Pral6066g00003 795 MobiDBLite consensus disorder prediction 1 43 - -
Pral6066g00003 795 Pfam Coiled-coil region of Oberon 655 784 IPR032535 -
Pral6066g00003 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 470 490 IPR004082 -
Pral6066g00003 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 346 368 IPR004082 -
Pral6066g00003 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 385 400 IPR004082 -
Pral6066g00003 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 424 445 IPR004082 -
Pral6066g00003 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 543 562 IPR004082 -
Pral6066g00003 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 691 711 IPR004082 -
Pral6066g00003 795 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 730 752 IPR004082 -
Pral6066g00003 795 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 105 794 IPR004082 -
Pral6066g00003 795 Coils Coil 697 717 - -
Pral6066g00003 795 MobiDBLite consensus disorder prediction 125 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6066g00003 Pral-Chr6066 20869 24925 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6066g00003 433 637 PHD Gene Family AT5G57380 24.390 1.32e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6066g00003 - - gmx:100820216 1219.14