Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6060g00008 ATGGAGGCTAAATTTCGGGGGAAGAATCAGTATGTCTATGGACCTGTGGTGCCGGAAATGAAAGCGGTTGGAAATAGGAGTTTGGAGTGGAATTTGGAAGACTGGAAATGGGACGGAGATCTTTTCACTGCTAGTCCGCTAAATCCAGTTCCTTCTGATTGTAGAAATAGGCAATCTTTCCCAGTTGATCCTGAAATCCCTGCGAAAGCTAATCCTTCTAACATTTTATCTTCTAATTGGGATGATGCCAACCCAGAGAAAGGAAAGAGAGAATTGGAAAAAAGGAGGAGAGACGTTATGTCTGAAGATGATGAGATGAATGATGAAGCTGGCTGTCTAAATTTAAACCTTGGGGCTCAAATTTACCCCATCATGGAAGGGGATGAAAAAAGTGGAAAGAAGACAAAGATAGTTGGGAGTGGGACTACTTCAAACCGAGCGGTTTGTCAGGTGGAAGATTGTAGAGCCGATCTTAGTAATGCGAAAGATTACCACCGTCGGCATAAGGTCTGTGATATGCATTCCAAGGCCAGCAAAGCACTGGTAGGAAATGTTATGCAGCGTTTCTGTCAACAGTGTAGCAGGTTTCATGTTCTTCAAGAGTTTGATGAGGGGAAAAGAAGTTGTCGGAGGCGTTTGGCAGGCCACAATAGGAGGAGGAGAAAGACACATCCTGATGCTGTCGTTAATGGAGGCTCCCTGAATGATGAAAGGGGCAGCAGCTATTTGTTAACAAGTCTTCTTCGTATACTGTCCAATATGCACTCAAATGGCTCAGATGCTACTAGGGACCAAGATATTCTCTCTCATCTGCTAAGGAATCTGGCAAGTCTGGCTGGTACAATCAATGGAAGGAACATAAGCTCCTTATTGGAGGGATCCCAAGGTTTGGTGAATGCTGGAACATCTGGAACTTCCGAAAAAGTGCCTAATCTAAATTCAAATGGCTCTGAACCCATCAGATCTCCTGGTTCTTCCATCAAGACAGATAATGGTCTCAGCAGTCGTGACCCTCCAAAGCCTATGGGACAGTCTGAGACAGTGCCTGCATATGATATGGCGCAAAAATGCTTACCTTCAGGTGATGTTGGGGTTGGAAGTTTAAAATCTCCTTCAGGATCACAGCCTTCAAATACGCTTCTGTCAAGGGATAACCCTCCACTCCAATCAGTTGCAGCAGAAACTACAATTAGAAGAAACGGTTTAAATCACATTGACCTCAATAATGCATATGATGACGTGCAAGATGAAGCCGAGAACCTTAGGAAGTCTCATCCACCGGGGCCTTCGGGTATTGGGTCTTTTGATCATCCTTCCTGGTTACAACTTGACACTCAAAAGTCAAGTCCACCACAGACAAGCAGAAACTCGGATTCAACCTCCTCTCAGTCACCTTCTAGTTCTAGTGGAGAAGCTCAGACTCGCACGGATCGAATTGTTTTCAAACTCTTTGGGAAGGATCCAAATGATTTTCCTCTTGTTCTTCGATCACAGATTCTCAGCTGGTTATCCCACAGTCCCACAGAGATCGAGAGCTATATTAGGCCAGGCTGTATCATATTAACAGTTTATCTCTGTCTAGAAAAATCTGCATGGGAGGAGCTCTGCTGTAATTTAGGACTCAACTTGAAAAAGCTTCTTGCTGCATCAAATGATTCTTTCTGGACGACAGGGTGGGTGTATACAAGAGTGCAGCATTCTGTAGCTTTTCTGTATAATGGCCAGGTTGTCTTAGACGTTCCCTTGAGCCTTAGAAGCCCACAACACTGTAGGATTTCATGTGTTAAGCCACTTGCTGTTTCTTCAATGGCAAGCACTCAATTTCTTGTCAAAGGTGTCAACCTTTTCCATTCTAGCACAAGGTTACTCTGTGCACTTGAAGGAAAGTATCTGGCACAGTATAGTTGTTGTGACTTGATTGATGGTGTTGATCCAGCTATTGAACATGATGAGCATCAGTGCCTTAGGTTCGCTTGCACTATACCGAGTGTTACTGGGAGGGGATTTATTGAGGTGGAAGATTTTGGTCTTAGCAGCTGTTCCTTTCCTTTTATTGTTGCGGAGCCAGAAATTTGTGCAGAGATCTGTAATCTGGAGAGTGTGATTGAGGCTGCTGAGATCTGTAGAGATGTACGGATGAGAAGCAAACAAATGGAAGAAAAGACTCGAGCCTTGGATTTCGTACAAGAAATGGGTTGGCTCCTTCATAGAAGTCGCATGAAAGCTAGGTTGGGTCCCATGGCACCTGTCCAGGATCTGTTTCATTTCAATCGGTTCAAGTGGCTTGTTGACTTCTGCATGGACCATGATTGGTGTGCTGTGATGAAAAAGCTTCTGGACATTGTGTTTGAGGGTACTATTGATGCAGGAGAGCATGCCTCTGTCGAGCTTGCATTGTTAGACCTGGGTCTTCTACATAGAGCTGTGAAGAGAAATTGCAAGCCTATGGTGGAACTACTGCTGAAATTCGCACCAGTCAAATCTTCAGATGGTGAAAGTAAGGACAAAGAAGTTGCCAAGTACACTGACAGATTCTTATTTAAACCTGATAGTGTTGGCCCTGCTGGTTTGACTCCGCTTCATGTTGCGGCAAGCATGCATTGCTCAGAAAATGTGTTGGATGCTTTAACTGATGACCCTGGAATGGTGGGAATCAAGGCTTGGAAAAGTGCCCGGGACAACACAGGTTTGACCCCAGAGGAGTACGCATCCATGAGGGGCTACCACTCCTACATTCAACTTGTCCAGACAAAAGCAAGCAAGAGAAGTGATGAAACTCATCATTATGTGCTTGACATCCCACCTTCCCTTGTAGATAGTAACACAAAGAAGAAGCAAAGGTCATCATCGAAAGTTTCAAGCTTGCAAACCGAGAAGATTAAAATGGCAGCAGCAACGATTGCACATCAGTGCGGACTGTGTCAGCACAAGCTGGCTCGTCACAGCACGAGGACAGCACTGGTTTATAGGCCAGCAATGCTATCTATGGTGGCCATTGCGGCTGTATGTGTCTGTGTGGCTTTGCTCTTCAAAAGCTCACCCCAAGTTTCTTATGTCTTCCAGCCCTTCAGATGGGAATCATTAGAGTATGGCTCAATTTAG 3102 0.4478 MEAKFRGKNQYVYGPVVPEMKAVGNRSLEWNLEDWKWDGDLFTASPLNPVPSDCRNRQSFPVDPEIPAKANPSNILSSNWDDANPEKGKRELEKRRRDVMSEDDEMNDEAGCLNLNLGAQIYPIMEGDEKSGKKTKIVGSGTTSNRAVCQVEDCRADLSNAKDYHRRHKVCDMHSKASKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPDAVVNGGSLNDERGSSYLLTSLLRILSNMHSNGSDATRDQDILSHLLRNLASLAGTINGRNISSLLEGSQGLVNAGTSGTSEKVPNLNSNGSEPIRSPGSSIKTDNGLSSRDPPKPMGQSETVPAYDMAQKCLPSGDVGVGSLKSPSGSQPSNTLLSRDNPPLQSVAAETTIRRNGLNHIDLNNAYDDVQDEAENLRKSHPPGPSGIGSFDHPSWLQLDTQKSSPPQTSRNSDSTSSQSPSSSSGEAQTRTDRIVFKLFGKDPNDFPLVLRSQILSWLSHSPTEIESYIRPGCIILTVYLCLEKSAWEELCCNLGLNLKKLLAASNDSFWTTGWVYTRVQHSVAFLYNGQVVLDVPLSLRSPQHCRISCVKPLAVSSMASTQFLVKGVNLFHSSTRLLCALEGKYLAQYSCCDLIDGVDPAIEHDEHQCLRFACTIPSVTGRGFIEVEDFGLSSCSFPFIVAEPEICAEICNLESVIEAAEICRDVRMRSKQMEEKTRALDFVQEMGWLLHRSRMKARLGPMAPVQDLFHFNRFKWLVDFCMDHDWCAVMKKLLDIVFEGTIDAGEHASVELALLDLGLLHRAVKRNCKPMVELLLKFAPVKSSDGESKDKEVAKYTDRFLFKPDSVGPAGLTPLHVAASMHCSENVLDALTDDPGMVGIKAWKSARDNTGLTPEEYASMRGYHSYIQLVQTKASKRSDETHHYVLDIPPSLVDSNTKKKQRSSSKVSSLQTEKIKMAAATIAHQCGLCQHKLARHSTRTALVYRPAMLSMVAIAAVCVCVALLFKSSPQVSYVFQPFRWESLEYGSI 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6060g00008 1033 Coils Coil 89 109 - -
Pral6060g00008 1033 MobiDBLite consensus disorder prediction 83 103 - -
Pral6060g00008 1033 SUPERFAMILY SBT domain 147 228 IPR036893 GO:0003677|GO:0005634
Pral6060g00008 1033 ProSiteProfiles Zinc finger SBP-type profile. 146 223 IPR004333 GO:0003677
Pral6060g00008 1033 MobiDBLite consensus disorder prediction 301 387 - -
Pral6060g00008 1033 MobiDBLite consensus disorder prediction 417 473 - -
Pral6060g00008 1033 SUPERFAMILY Ankyrin repeat 804 914 IPR036770 -
Pral6060g00008 1033 MobiDBLite consensus disorder prediction 367 387 - -
Pral6060g00008 1033 FunFam Squamosa promoter-binding-like protein 14 140 210 - -
Pral6060g00008 1033 Gene3D - 139 210 IPR036893 GO:0003677|GO:0005634
Pral6060g00008 1033 MobiDBLite consensus disorder prediction 213 235 - -
Pral6060g00008 1033 MobiDBLite consensus disorder prediction 53 105 - -
Pral6060g00008 1033 Gene3D - 793 933 IPR036770 -
Pral6060g00008 1033 MobiDBLite consensus disorder prediction 439 473 - -
Pral6060g00008 1033 Pfam SBP domain 149 222 IPR004333 GO:0003677
Pral6060g00008 1033 Coils Coil 404 424 - -
Pral6060g00008 1033 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 89 905 IPR044817 GO:0003677
Pral6060g00008 1033 MobiDBLite consensus disorder prediction 301 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6060g00008 Pral-Chr6060 56094 63531 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6060g00008 1 1032 SBP-box Gene Family AT3G60030 46.819 0.0 818
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Pral6060g00008 SBP 8e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6060g00008 - - gmx:100776125 1476.07