Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6056g00007 ATGGGAAGAGCACCTTGCTGCGACAGGAATGGCCTCAAGAAAGGTCCCTGGACCCCTGAAGAAGACTCCAAGCTCATTAATTACATTCAAGCCCATGGCCCTGGCAATTGGCGAACCCTTCCCAAGAATGCTGGTCTTGAAAGATGTGGCAAGAGTTGCCGACTTCGATGGACTAATTACCTCAGGCCCGACATCAAGAGAGGGAGGTTCTCCTTCGAAGAAGAAGAGATCATTATCCAGCTTCACAGCATAATGGGAAACAAGTGGTCGGCGATAGCTGCTAGATTGCCTGGAAGAACCGATAATGAAATAAAGAACTACTGGAACACCCACATACGAAAGAGGCTTCTTCGAATGGGAATCGACCCTGTTACTCACGCCCCACGACTCGATCTTCTCGATGTATCCTCCATTCTTGGGTCGGTGTTGGGGAACACGTCGCTCTTGAATCTGCAGGGCTTGTTGGGAGCTCAGGCCTTGATGAATCCTGAATTGTTAAAAATGGCCAACACTCTGTTCTCGTTGAAGAACGAAAACCCAGAAATGGTTTCACAGAATCTACAACAAATGATCCAACCTGGCCATTCTCAAGTTCAAGCACAAACCCAAATCGATCCCGCATTAGCACAATTCAATAGCCAGTTTCAGATGCCAATGGAAAACAACAACGCGGAAGGATTCCCTGGGGATTTTCAAACCATGGGATTTTCAGATTCCCAAGTTCCATCCTACATGGCGGGCAACCTTGATCTGCTGCAACAAAACCAAGCTGAATTTCTGGGGGATCCTACTTTCCCGCAAAACATGGGCTATGACTCTGTTTTTTCGACGCCATCATCAAGTACAACCCCATTGAACTCATCATCGACGCATGTGAATAATAGCAGTGAAGAAGAGAGAGATAGCTATTGCAGCGACCTGTTCAAGTTCGAAATCCCAGAGAATTTAGATCTTAGCAACTTGCTGTAA 969 0.4675 MGRAPCCDRNGLKKGPWTPEEDSKLINYIQAHGPGNWRTLPKNAGLERCGKSCRLRWTNYLRPDIKRGRFSFEEEEIIIQLHSIMGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHAPRLDLLDVSSILGSVLGNTSLLNLQGLLGAQALMNPELLKMANTLFSLKNENPEMVSQNLQQMIQPGHSQVQAQTQIDPALAQFNSQFQMPMENNNAEGFPGDFQTMGFSDSQVPSYMAGNLDLLQQNQAEFLGDPTFPQNMGYDSVFSTPSSSTTPLNSSSTHVNNSSEEERDSYCSDLFKFEIPENLDLSNLL 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6056g00007 322 CDD SANT 69 112 IPR001005 -
Pral6056g00007 322 Gene3D - 13 66 - -
Pral6056g00007 322 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral6056g00007 322 FunFam Transcription factor MYB39 69 130 - -
Pral6056g00007 322 CDD SANT 16 61 IPR001005 -
Pral6056g00007 322 SMART sant 66 114 IPR001005 -
Pral6056g00007 322 SMART sant 13 63 IPR001005 -
Pral6056g00007 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral6056g00007 322 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral6056g00007 322 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Pral6056g00007 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 273 - -
Pral6056g00007 322 Gene3D - 69 116 - -
Pral6056g00007 322 FunFam MYB-related transcription factor 13 66 - -
Pral6056g00007 322 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Pral6056g00007 322 MobiDBLite consensus disorder prediction 270 293 - -
Pral6056g00007 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral6056g00007 322 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral6056g00007 322 MobiDBLite consensus disorder prediction 270 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6056g00007 Pral-Chr6056 87847 89081 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6056g00007 1 322 MYB Transcription Factor Family AT4G21440 49.304 1.27e-107 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral6056g00007 Myb_DNA-binding 7.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6056g00007 K09422 - qsa:O6P43_000650 390.963