Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6056g00001 ATGACGAGAGGCCATTGCTATGACAAAAATGGAGTGAAGAGAGGTGCGTGGAGTAAGGAGGAGGATGAAAGGTTAAGAGCGTATGTTGAGAGATATGGCCACAGCAATTGGCGTCAGCTCCCCAAACACGCAGGTTTATCAAGGTGTGGAAAGAGTTGCCGACTTCGCTGGCTAAATTACCTTCGTCCGGGCGTGAAGCTGGGAAATTATACCCAGGAAGAAGACGAACTCATCATCAAATTGCATGAACAGCATGGAAATAAATGGTCTTTGATTGCCAAAAGGTTACCAGGGAGAAGTGACAACGAGGTTAAGAACCATTGGCATAGCCACCTAAAGAAGCACGTTGGGTGCAATCATGAGGAAAAATCTGAGTTCAAAACGAAGGCTAGTGGTACTTGTGAAGGAGAAACAACAAAGAATTTCGAACCTGAAAACCCTCTGCTTGGTTTTTCTGCTGCTTCCTCCAGTGATGTCTCAGAAAGCTCACCACCCTTTTACAATTCATCTTCAGCCTTTTCCTCAGGAGGATCAGGCGCTGCTAATGTTGCATGGGAAATATTTGACGAATTCGGAGATTTTTGGACCCAACCATTTGTCCCAGAAAATATATATGACCAGGATAACTGTTATAGCCTGTACTATGCTGCACACGAAGCTGACGTGGATGATTATTCCTCATACCTCCTCGAAAATGCTGAGTTTTTGTGGCAAGAGATGCAAGAATTTCCTGAAGATCCTCAAAAGGATATATAG 756 0.4418 MTRGHCYDKNGVKRGAWSKEEDERLRAYVERYGHSNWRQLPKHAGLSRCGKSCRLRWLNYLRPGVKLGNYTQEEDELIIKLHEQHGNKWSLIAKRLPGRSDNEVKNHWHSHLKKHVGCNHEEKSEFKTKASGTCEGETTKNFEPENPLLGFSAASSSDVSESSPPFYNSSSAFSSGGSGAANVAWEIFDEFGDFWTQPFVPENIYDQDNCYSLYYAAHEADVDDYSSYLLENAEFLWQEMQEFPEDPQKDI 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6056g00001 251 CDD SANT 69 112 IPR001005 -
Pral6056g00001 251 SMART sant 13 63 IPR001005 -
Pral6056g00001 251 SMART sant 66 114 IPR001005 -
Pral6056g00001 251 FunFam Transcription factor RAX3 6 67 - -
Pral6056g00001 251 CDD SANT 16 61 IPR001005 -
Pral6056g00001 251 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Pral6056g00001 251 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Pral6056g00001 251 Gene3D - 69 140 - -
Pral6056g00001 251 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Pral6056g00001 251 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 171 - -
Pral6056g00001 251 Gene3D - 14 66 - -
Pral6056g00001 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Pral6056g00001 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Pral6056g00001 251 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pral6056g00001 251 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6056g00001 Pral-Chr6056 2528 3873 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6056g00001 1 119 MYB Transcription Factor Family AT2G31180 63.866 7.67e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pral6056g00001 Myb_DNA-binding 5.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6056g00001 K09422 - pop:7458852 233.032