Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6055g00005 ATGAACCGAGGATCTAATGAAGCAGCTAATAGCCCTTTTCAGACTCCGATGTCAGGAAAAATGGGGAAGGCAAGCAAAGCATCAAAGCTTCCAAAATGCAGCAAAGCTGGACCTCAAACCCCAGGATCAAATGTTGGTTCTCCTTCTGGCAACAATCTTACTCCAGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTCTGTTGACAAAAAAGTTCATCAACTTGATCAAGCAAGCCGAGGATGGTATTCTTGATTTGAATAAAGCTGCTGATACATTAGAGGTGCAAAAGAGGAGAATATATGATATAACAAACGTTCTTGAAGGGATTGGTCTTATAGAAAAGAAGCTCAAAAACAGAATTCAATGGAAGGGATTGGATGTGTCAAGGCCAGGGGAGGCTGATGATAGTTTTTCTAGTTTGCAGACAGAGGTTGAAAACCTTACTATGAAGGAGGGCCAGTTAGATGAGCAAATAAGGGAGATGCAAGAAAGACTGAGGAAACTTAGTGAAGATGAAAACAATCAGAAGTGGCTTTTTCTCACGGAAGATGATATAAAGGGTTTGCCCTGCTTCCTGAATGAAACCTTAATAGCCATTAAAGCTCCCCATGGCACCACTCTTGAGGTCCCTGATCCAGATGAGGCTGTTGATTATCCCCAAAGGAGATACAGGATAATCCTCAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAGGAAAAATTTGAGGAGATCAATGGAGTCGATGTACCACCCAATCTTCCATCCAGTCCAGAGTTGAACAGGCATCCGGCAACAGTGATCACTGAGGATGCAAGGAATGACAAAGAAATGCAGGAACAAGACGGTCATAGACCTGGTTCTGATTTGAGTGCCTCACAGGACTTCGTTAGTGGGATCATGAAGATTGTTCCGTCAGATGTTGATAGTGATGCTGATTATTGGCTTCTATCAAATGCTGATGTTAGCATAACAGACATGTGGAGAACAGAATCTGGAATTGAATGGAACGAACTGGACGCACTTAATGAAGATTATTGCATGCCTCAGGAGAGCGCAGCACGACCTGAGACGCCTCCAAACATGAGTCAACTGCCTTCGACGGCTAACCCTGAAGGAGGCTGA 1140 0.4368 MNRGSNEAANSPFQTPMSGKMGKASKASKLPKCSKAGPQTPGSNVGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFSSLQTEVENLTMKEGQLDEQIREMQERLRKLSEDENNQKWLFLTEDDIKGLPCFLNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIILRSTMGPIDVYLVSQFEEKFEEINGVDVPPNLPSSPELNRHPATVITEDARNDKEMQEQDGHRPGSDLSASQDFVSGIMKIVPSDVDSDADYWLLSNADVSITDMWRTESGIEWNELDALNEDYCMPQESAARPETPPNMSQLPSTANPEGG 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6055g00005 379 PANTHER TRANSCRIPTION FACTOR E2F 8 339 IPR015633 GO:0000978|GO:0006357
Pral6055g00005 379 CDD E2F_DD 136 242 IPR032198 GO:0046983
Pral6055g00005 379 Coils Coil 145 175 - -
Pral6055g00005 379 Pfam E2F transcription factor CC-MB domain 141 241 IPR032198 GO:0046983
Pral6055g00005 379 SMART E2F_TDP_2 60 125 IPR003316 GO:0005667|GO:0006355
Pral6055g00005 379 Coils Coil 76 96 - -
Pral6055g00005 379 MobiDBLite consensus disorder prediction 354 379 - -
Pral6055g00005 379 FunFam E2F transcription factor 1 54 127 - -
Pral6055g00005 379 MobiDBLite consensus disorder prediction 37 55 - -
Pral6055g00005 379 Gene3D - 54 127 IPR036388 -
Pral6055g00005 379 Gene3D - 132 242 - -
Pral6055g00005 379 MobiDBLite consensus disorder prediction 271 289 - -
Pral6055g00005 379 SUPERFAMILY E2F-DP heterodimerization region 138 242 IPR037241 -
Pral6055g00005 379 MobiDBLite consensus disorder prediction 1 18 - -
Pral6055g00005 379 MobiDBLite consensus disorder prediction 1 55 - -
Pral6055g00005 379 Pfam E2F/DP family winged-helix DNA-binding domain 62 125 IPR003316 GO:0005667|GO:0006355
Pral6055g00005 379 SUPERFAMILY "Winged helix" DNA-binding domain 60 123 IPR036390 -
Pral6055g00005 379 MobiDBLite consensus disorder prediction 254 297 - -
Pral6055g00005 379 MobiDBLite consensus disorder prediction 361 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6055g00005 Pral-Chr6055 14327 18849 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6055g00005 6 378 E2F-DP Transcription Factor Family AT5G22220 60.101 5.28e-150 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Pral6055g00005 E2F_CC-MB 1.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6055g00005 K06620 - gmx:100819817 597.816