Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6045g00012 ATGGCAAGTGGGTTTGAGGAATCAACAAGCAGGTCGCCCCCAAGCCCTTCCTGCTCCAGCAACAGTAACAATGACACGGGCAGTTTTGAATGCAATATTTGCTTTGACTTGGCACAAGATCCTATAATTACTTTATGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCATTCTCAATCACGAGAATGCCCAGTGTGCAAGGCCCTAGTTGAGGAGAAAAAGTTGGTCCCCTTGTATGGGAGAGGAAAGACATCAACGGACCCGAGATCAAAATCTTTTCCATGCGATAATATCCCTCATCGGCCAGCTGGTCAGAGACCTGAAACTGCCCCTTCACGAGAACCAAATCATTTTCCTCAACATGGATTTGGATTTATGGGTGGGTTGGGAGGGTTTTCCCCAATGGCAACAGCAAGATTTGGGAATTTCACATTGTCAGCAGCATTTGGTGGTTTTATACCATCCTTATTTAACTTCCAGTTGCATGGGTTTCATGGTGGGGCCTTGTATAGTGGAGCAGCTGGTTTTCCTTTTGGATATGCTACTTCATTTCATGGTGGCCATGCACATGGGCACCCTCAGTATGCAGGTCAAGGACAACAAGATTACTACCTGAAGAGGCTGCTTCTGTTTGTTGTCTTTTGTGTCGTTCTTGCGTTTATTTGGCAATAG 687 0.4541 MASGFEESTSRSPPSPSCSSNSNNDTGSFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEKKLVPLYGRGKTSTDPRSKSFPCDNIPHRPAGQRPETAPSREPNHFPQHGFGFMGGLGGFSPMATARFGNFTLSAAFGGFIPSLFNFQLHGFHGGALYSGAAGFPFGYATSFHGGHAHGHPQYAGQGQQDYYLKRLLLFVVFCVVLAFIWQ 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6045g00012 228 Pfam Zinc finger, C3HC4 type (RING finger) 31 71 IPR018957 GO:0046872
Pral6045g00012 228 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Pral6045g00012 228 SMART ring_2 31 71 IPR001841 -
Pral6045g00012 228 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Pral6045g00012 228 MobiDBLite consensus disorder prediction 86 120 - -
Pral6045g00012 228 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 14 85 - -
Pral6045g00012 228 SUPERFAMILY RING/U-box 27 84 - -
Pral6045g00012 228 MobiDBLite consensus disorder prediction 1 22 - -
Pral6045g00012 228 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 13 224 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pral6045g00012 228 CDD RING-HC_AtRMA-like 29 73 - -
Pral6045g00012 228 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 14 85 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6045g00012 Pral-Chr6045 63611 64833 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6045g00012 16 211 C3H Transcription Factor Family AT1G19310 61.951 2.71e-82 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6045g00012 K10666 - gmx:100794086 369.007