Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral603g00002 ATGGTTGGTGAAGCTAGGCATCAAATTGAATACTACCTCAGAGTGCTTAAAAATGAAGCAGAGGATGAAGAAGTTGGATCATGTGAGGAGCTAGAAGAAGATCGTGTTGAAGAAGTTGAGCAAAAGCAGCTAGAAGAAATATCTCTTAATGGAAATGATCACAAATCAGGATTTGTTGAATCAAATGATAAGAAGAGGTGTCTGAATGTTGCATCTGGTGAATTAACTACATTGCTATGCTATCAGTCACGAAAGAAGTGCAAGCAAGTGGGATCTTCTGGCCTGAAATTAGAATCTGGACATTCAGCGTTGGAGCTCAATAATGACACTGTCACTTCACTGGCATCTATTGATAATTGTTCTTCCAAAGAAGGTACGGGAAGTTCTGGAAAACGAAGGCGCAGCAGATGGGAACCACAGTCTGAGGATGATGGCGTGAAAGACAATCAGACTTGCAAGAGGAGGAAAACCAGGTGGTCCAGTGAGGACACTCAACTAAAATTGCTGGGGCCACTTCAGTTGCCTGACTTCACAAAAGATTTTCTTCTTGGATGTGAGAATAATCCTGAAATTCAAGGGCTGAAAGCTGAGCTTTTTGAGACTAATAGAAGATTGCATGGACCTCTTCATGATGATAGGCTTGGGGAGGAAAGATCTCCATCACCAGAGCCAATATATGATGACCATGGCATCAGAATAAATACAAGAGAAGTAAGACTTCGTCAGAAACTTGTGCAGAAGCGTCAAAGTATCGTATCAAAATTGATCAAATCAAATCCATGTTTTGGCCCTCCTCCAGATTACAAGCCTCCGAAACTCTTCAAAAAACTTTACATACCTGTGACAGAATATCCGGAGTACAATTTTGTTGGCCTTATAATTGGTCCTCGTGGAAACACACTGAAGAGAATGGAAAATGAAACCGGGGCCAAGATTCACATAAGAGGAAAAGGATGCTCGAAAACAACTAACATATCCACCTCTTCTAAAGAGGACTTGCATGTGTATATAGAAGCAGACAACAAAAGTTCTCTGGATGGAGCAGTTTCCATGGTTGAAAAATTGCTAATCCCAGTTGAAGGAAGAAATGAGCACAAGGAGGCTCAATTAAAGGAGCTGGCCACGCTGAAAGGAACAGCTAGGGATGAAAATATGTGCTATGTTTGCGGTGATGAGGGACATCTGTCATATGCCTGCCCTGACCTTCAATCAACTTTTAAAGTGAACTCATGCTATACATGTTTTAGTGCCAGTCCCTTGGATGTGCTATCACCACAGAATGACTCTGTGCAGGGTTCTGGGTTTGGTTTTAGTTTCGGTTCAACACAGAGCAGACAACGGAGGTATGGAAAGAAATCATTGATGAACAATGTTTATGTTGGCAATCTGCCTCAAGCGTTTGATGATAATAGATTGTCTGAGCTGTTTTCTCCATTTGGTAAGATCCTTGAAGTAAAAGCAATCAAGGATCGAACAACTGGAATTTGTAGAGGTTTTGGATTTGTTGAGTTTGACAGTGCCGCGGATGCACAAGTGGCTGTGACTCATATGAACGGTTTTAAAATGGATGGGAGGGTTTTGAAGGTGAGGATAGCTAGGCTTTTGTCAAATGCTGAAGTTTCAAGCTTGAACCTTTTTCCTCAGCGCTCTGGTTCTGCAGGAACATCCCAAAGTGTTAGAAGCCAAACAGATCGATCTGGTCCATTACATTTTATGCTGCCAGAACATCCAACTTCGCTTCACAACAGCAGTGGCATGAATCTTTTTTCATCCACTCTAAACTCACAGCATTGTGATCTTAAGAAGGATCGAAGCCTTTCCCCTCTAAGCTGCTATTCAAGCCCTTCTGATTTTAGTAATTCTGGCAAAATGCATTTTTCATGCAACTTTTCAGATCAAAGTGTTTCGTTATCTGGTGGTTCAATTCCACAGAGTCCTGGCTCCCAACATCGGTCATATTTTGTGACGCCGCCTCCCGATAGAGCTGCCCTGCCCAGTCCTGACCACAGATTAGAAGATGCGAATTCTTTCACTTCTTCATTGCAGAGATGGTATTACAGGGCACTTCATTGA 2073 0.4216 MVGEARHQIEYYLRVLKNEAEDEEVGSCEELEEDRVEEVEQKQLEEISLNGNDHKSGFVESNDKKRCLNVASGELTTLLCYQSRKKCKQVGSSGLKLESGHSALELNNDTVTSLASIDNCSSKEGTGSSGKRRRSRWEPQSEDDGVKDNQTCKRRKTRWSSEDTQLKLLGPLQLPDFTKDFLLGCENNPEIQGLKAELFETNRRLHGPLHDDRLGEERSPSPEPIYDDHGIRINTREVRLRQKLVQKRQSIVSKLIKSNPCFGPPPDYKPPKLFKKLYIPVTEYPEYNFVGLIIGPRGNTLKRMENETGAKIHIRGKGCSKTTNISTSSKEDLHVYIEADNKSSLDGAVSMVEKLLIPVEGRNEHKEAQLKELATLKGTARDENMCYVCGDEGHLSYACPDLQSTFKVNSCYTCFSASPLDVLSPQNDSVQGSGFGFSFGSTQSRQRRYGKKSLMNNVYVGNLPQAFDDNRLSELFSPFGKILEVKAIKDRTTGICRGFGFVEFDSAADAQVAVTHMNGFKMDGRVLKVRIARLLSNAEVSSLNLFPQRSGSAGTSQSVRSQTDRSGPLHFMLPEHPTSLHNSSGMNLFSSTLNSQHCDLKKDRSLSPLSCYSSPSDFSNSGKMHFSCNFSDQSVSLSGGSIPQSPGSQHRSYFVTPPPDRAALPSPDHRLEDANSFTSSLQRWYYRALH 690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral603g00002 690 Gene3D - 187 265 IPR047086 -
Pral603g00002 690 Gene3D K Homology domain, type 1 271 380 IPR036612 GO:0003723
Pral603g00002 690 CDD KH-I_BBP 272 357 - -
Pral603g00002 690 Gene3D - 440 568 IPR012677 -
Pral603g00002 690 SMART kh_6 273 357 IPR004087 GO:0003676
Pral603g00002 690 SMART rrm1_1 457 530 IPR000504 GO:0003723
Pral603g00002 690 MobiDBLite consensus disorder prediction 637 652 - -
Pral603g00002 690 MobiDBLite consensus disorder prediction 117 158 - -
Pral603g00002 690 Pfam Splicing factor 1 helix-hairpin domain 155 269 IPR032570 -
Pral603g00002 690 SUPERFAMILY Retrovirus zinc finger-like domains 380 415 IPR036875 GO:0003676|GO:0008270
Pral603g00002 690 MobiDBLite consensus disorder prediction 209 228 - -
Pral603g00002 690 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 456 534 IPR000504 GO:0003723
Pral603g00002 690 SUPERFAMILY RNA-binding domain, RBD 440 534 IPR035979 GO:0003676
Pral603g00002 690 MobiDBLite consensus disorder prediction 637 660 - -
Pral603g00002 690 MobiDBLite consensus disorder prediction 546 565 - -
Pral603g00002 690 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 458 528 IPR000504 GO:0003723
Pral603g00002 690 Pfam KH domain 288 330 IPR004088 GO:0003723
Pral603g00002 690 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 273 387 IPR036612 GO:0003723
Pral603g00002 690 Gene3D - 381 418 - -
Pral603g00002 690 MobiDBLite consensus disorder prediction 546 567 - -
Pral603g00002 690 PANTHER RNA-BINDING PROTEIN RELATED 117 568 IPR045071 -
Pral603g00002 690 ProSiteProfiles Type-1 KH domain profile. 288 352 - -
Pral603g00002 690 ProSiteProfiles Zinc finger CCHC-type profile. 386 401 IPR001878 GO:0003676|GO:0008270
Pral603g00002 690 MobiDBLite consensus disorder prediction 127 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral603g00002 Pral-Chr603 19164 22571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral603g00002 385 532 Eukaryotic Initiation Factors Gene Family AT3G11400 32.298 7.25e-13 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral603g00002 K13095 - pcin:129306904 1025