Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6031g00006 ATGGCTGCGGTTGCTGAGATTTCCGGTGATTCAGCCGCTGCCAGCAAATTGGACTCAAAGCCGAGGCCTGATACCGAATTTAATGTACAGAAGCTTGTTGATATGTTTACAAAGCTGAATCCTCTAGCTAAAGAGTTTTTCCCATCATCGCATTCTCATAATCATCTTCGTCATCTGAGCTCTAATCAGTTCTTTCCCAACAATTTTCTGGTTAAGCCATCTGATAATGATAATTACTCAAACAATCGCAGGAGAAGAAGCAATTTTAATCAGGGAAGAAGGCTGAATGGAAGAGTGCATAAGGCCCAAAGAGAAGACAGCATTAGAAGAACAGTATATGTTTCTGACATTGATCAGCATGTAACTGAGGAGCGGCTTGCTGCCTTATTTACCAGTTGTGGACAAGTGATTGATTGCCGAATTTGTGGTGACCCACATTCAATCCTTCGCTTTGCATTTGTGGAGTTTTCAGATGAACGAGGCGCAAGAGCAGCTCTAAACCTGGGTGGTACTGTACTGGGCTACTATCCAGTCAGGGTTCTTCCTTCAAAAACTGCCATCCTTCCTGTGAATCCTACATTCCTACCCAGGTCAGATGATGAGCGGGAGATGTGTAGCAGGACTGTTTATTGTACAAATATTGACAAAAAGCTTTCTCAGGCTGAAGTGAAGAATTTTTTTGAAACAGCTTGCGGAGAGGTTACCCGCTTGAGGCTTTTAGGGGATCATGTGCATTCAACCCGAATTGCTTTTGTGGAATTTGCAATTGCAGAAAGTGCTATAATTGCTCTAAGTTGTAGTGGGATGCTCTTGGGAACTCAGCCTATCAGGGTAAGTCCTTCAAAGACACCTGTGAGGCCAAGGATCGCTCACCCAATGTCGTGTTGA 888 0.4381 MAAVAEISGDSAAASKLDSKPRPDTEFNVQKLVDMFTKLNPLAKEFFPSSHSHNHLRHLSSNQFFPNNFLVKPSDNDNYSNNRRRRSNFNQGRRLNGRVHKAQREDSIRRTVYVSDIDQHVTEERLAALFTSCGQVIDCRICGDPHSILRFAFVEFSDERGARAALNLGGTVLGYYPVRVLPSKTAILPVNPTFLPRSDDEREMCSRTVYCTNIDKKLSQAEVKNFFETACGEVTRLRLLGDHVHSTRIAFVEFAIAESAIIALSCSGMLLGTQPIRVSPSKTPVRPRIAHPMSC 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6031g00006 295 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 35 288 - -
Pral6031g00006 295 Gene3D - 195 288 IPR012677 -
Pral6031g00006 295 Gene3D - 71 186 IPR012677 -
Pral6031g00006 295 FunFam Polyadenylate-binding protein-interacting protein 10 201 279 - -
Pral6031g00006 295 CDD RRM1_CID8_like 108 187 IPR034823 -
Pral6031g00006 295 SUPERFAMILY RNA-binding domain, RBD 197 288 IPR035979 GO:0003676
Pral6031g00006 295 FunFam Polyadenylate-binding protein-interacting protein 11 75 187 - -
Pral6031g00006 295 Pfam Ataxin-2 C-terminal region 35 51 IPR009818 -
Pral6031g00006 295 MobiDBLite consensus disorder prediction 73 101 - -
Pral6031g00006 295 MobiDBLite consensus disorder prediction 1 24 - -
Pral6031g00006 295 SUPERFAMILY RNA-binding domain, RBD 89 186 IPR035979 GO:0003676
Pral6031g00006 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 110 185 IPR000504 GO:0003723
Pral6031g00006 295 SMART rrm1_1 111 181 IPR000504 GO:0003723
Pral6031g00006 295 SMART rrm1_1 208 279 IPR000504 GO:0003723
Pral6031g00006 295 CDD RRM2_CID8_like 203 284 IPR034825 -
Pral6031g00006 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 283 IPR000504 GO:0003723
Pral6031g00006 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 276 IPR000504 GO:0003723
Pral6031g00006 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 112 174 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6031g00006 Pral-Chr6031 44879 49173 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6031g00006 107 264 Eukaryotic Initiation Factors Gene Family AT1G34140 25.466 9.83e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6031g00006 - - qsa:O6P43_001153 473.781