Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6028g00001 ATGGTGAGCCCAAAATCGCAAAGCCCCGAGAGCGTTCCTTGCGATTTCTGTACGCAACAAACAGCTGTTCTGTATTGCAGAGCTGACTCTGCCAAGCTCTGTTTGTTCTGCGATCAACACGTTCACTCCGCTAACTTGCTCTCTCGCAAGCACTTGCGCTCTCAGATCTGCGATAATTGCTCCTCCGAGCCTGTCTCCGTCCGGTGTAACACCGACAACCTTGTTCTCTGCCAAGACTGCGATTGGGACGCTCATGCCTCATGCTCCGTCGCCGCTTCTCACCATCGTACGCCTGTTGAGGGTTTCACGGGGTGTCCTTCTTCATCTGAACTCGCTTCGCTTTGGGGATTTCAATTTGAGAATAAGACTTTAGAACAATCTCCTTCTTCTTGA 393 0.5115 MVSPKSQSPESVPCDFCTQQTAVLYCRADSAKLCLFCDQHVHSANLLSRKHLRSQICDNCSSEPVSVRCNTDNLVLCQDCDWDAHASCSVAASHHRTPVEGFTGCPSSSELASLWGFQFENKTLEQSPSS 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6028g00001 130 CDD Bbox1_BBX-like 13 56 - -
Pral6028g00001 130 ProSiteProfiles Zinc finger B-box type profile. 9 56 IPR000315 GO:0008270
Pral6028g00001 130 Pfam B-box zinc finger 55 97 IPR000315 GO:0008270
Pral6028g00001 130 Pfam B-box zinc finger 12 52 IPR000315 GO:0008270
Pral6028g00001 130 SMART bboxneu5 57 99 IPR000315 GO:0008270
Pral6028g00001 130 SMART bboxneu5 9 56 IPR000315 GO:0008270
Pral6028g00001 130 Gene3D Classic Zinc Finger 9 94 - -
Pral6028g00001 130 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Pral6028g00001 130 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 13 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6028g00001 Pral-Chr6028 22461 23011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6028g00001 8 120 C2C2-CO-like Transcription Factor Family AT1G28050 72.566 6.35e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Pral6028g00001 zf-B_box 5.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6028g00001 - - pcin:129307671 242.276