LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral6027g00001	ATGCCTTTGCTTTACTTCGGTCTGCTCGTTTTCGTTTCTCGCCTTCTTAATCTCACAGCCCAGCCTGATTTCCGAGCGTTCTATTGTTACCTAGGAGGAGGTAACGACACAGACAAAAGTGACTACCTGGCCAACCTCAAGACCCTTCTTTCTGGTTTCACTTCCGACAACACAAACATTGAATACGGCTTCATCAATTCCTCTTACGGCCAAAACCCTGACACCGTTCACGCATTTGGATTCTGCAGAGGCGATGTGAAACCAGATTCTTGCCGCAGTTGCCTCCTCAACGCCACAATCCTTCTCCCACGACTTTGTCCAAATCAGAAGGATGCAGTTGGATACTATGACGACTGCACGTTTCTATACTCATATCGTTCAATATATGGAATATACAACGTCTCTGATGTGATATGCCCTCTGTGGAACCTGGCAAGTTCAACGACACTTACGGATAACTACGTACAGGTACTATTGGACAAAGTAAAGAACCAAGCACCAATCGGGGATTCTCATCGTAAGTTTGCAGCAGCAAATGATAGTACCGGCGAATATAGGAAAGTGTATGCTTTTGCTCAGTGCAGTCCAGATCTGCCTGAGGATTATTGCAGGTCCTGCTTACAGGATGTTTCCCAACGAATCCAACTATGCTGTGAAGGAAAGAATGGTGGTAGGGTTCTCCATCCGAGCTGCTATATTAGATATGAGAGCTACCTCTTCTATGATTACACGGCTGTTTCAGCCCAGCCATCTCCTCCGCCATCCAGCCCCGTGACGCCGCCGCCCCAAGTTGGAGAAGAAGGTTTTAATCTGAGGTCCTTGCAATTTAGCTTAGCTACAATTGAAGCTGCAACAAATAAGTTTTCTGAAGAGAACAAAATAGGAAAAGGAGGATTTGGAGAAGTTTACAAGGGCACTCTTCCTGATGGACGAGAAGTTGCTGTCAAGAGACTCTCTAGAAGTTCAATGCAAGGAACATTAGAATTCAAGAATGAAATTTTGCTTATAGCCAAGCTCCAGCATAGAAATTTGGTGACGTTATTGGGATTTTGCTTGGAAAAACAAGAAAAAATTCTTATTTATGAATACGTACCTAACAAAAGCATTGATTTCTTCTTATTTGATTCGGACAAGCAAAGATTATTCAATTGGTTTGAGCGGTTCAAGATCATTGGGGGAATAGCACAAGGACTTTGTTATCTACATGAACATTCACGCCTTAAAGTCATCCATCGTGACCTCAAACCAAGCAATGTTTTACTAGATAATAAGATGAATGCAAAAATATTAGATTTTGGTATGGCAAGAATGATTTCTATAGATGAAGACCAAGGAAACACAAATAGAATTGTCGGAACACATGGTTATATGGCTCCTGAATATTTAATACATGGACAATTTTCTGAAAAGTCGGATGTATTTAGTTTTGGAGTCATAGTTTTAGAAGTGCTTAGTGGGAAGAGAAATGCCAGATCCTATGAATCATACCTCTTAACAAATGTCTGGAAGCAGTGGAATGAGGGAAAATCATTACAAATATTGGACCCTTTTCTGATGGAATCATGTTCTCAAACTGAAGCAACAAAATGTGTGCAAATTGGGCTATTGTGCGTTCAACAAAATCCAGAAGATAGGCCAACAATGGCTCAGATTGTTTCATATCTCAGCAATCTTTCCGTTGACTTACCATCTCCAAGAGAACCTGCATTCTTCATGCATTCCAATCCAACTATAGTCGCAGAATTGAGTTTGGATCAAACTCTCCAGAGTTCAACTTCCAAGTCAGCTGTTTCAAATGACTCGTCTCAGTTCTTGCCTCGATGA	1824	0.415	MPLLYFGLLVFVSRLLNLTAQPDFRAFYCYLGGGNDTDKSDYLANLKTLLSGFTSDNTNIEYGFINSSYGQNPDTVHAFGFCRGDVKPDSCRSCLLNATILLPRLCPNQKDAVGYYDDCTFLYSYRSIYGIYNVSDVICPLWNLASSTTLTDNYVQVLLDKVKNQAPIGDSHRKFAAANDSTGEYRKVYAFAQCSPDLPEDYCRSCLQDVSQRIQLCCEGKNGGRVLHPSCYIRYESYLFYDYTAVSAQPSPPPSSPVTPPPQVGEEGFNLRSLQFSLATIEAATNKFSEENKIGKGGFGEVYKGTLPDGREVAVKRLSRSSMQGTLEFKNEILLIAKLQHRNLVTLLGFCLEKQEKILIYEYVPNKSIDFFLFDSDKQRLFNWFERFKIIGGIAQGLCYLHEHSRLKVIHRDLKPSNVLLDNKMNAKILDFGMARMISIDEDQGNTNRIVGTHGYMAPEYLIHGQFSEKSDVFSFGVIVLEVLSGKRNARSYESYLLTNVWKQWNEGKSLQILDPFLMESCSQTEATKCVQIGLLCVQQNPEDRPTMAQIVSYLSNLSVDLPSPREPAFFMHSNPTIVAELSLDQTLQSSTSKSAVSNDSSQFLPR	607

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral6027g00001	607	Gene3D	-	25	127	IPR038408	-
	Pral6027g00001	607	Gene3D	-	137	240	IPR038408	-
	Pral6027g00001	607	FunFam	Cysteine-rich receptor-like protein kinase 10	140	240	-	-
	Pral6027g00001	607	FunFam	cysteine-rich receptor-like protein kinase 10	364	562	-	-
	Pral6027g00001	607	ProSiteProfiles	Gnk2-homologous domain profile.	132	240	IPR002902	-
	Pral6027g00001	607	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	409	421	IPR008271	GO:0004672\|GO:0006468
	Pral6027g00001	607	ProSitePatterns	Protein kinases ATP-binding region signature.	294	316	IPR017441	GO:0005524
	Pral6027g00001	607	ProSiteProfiles	Gnk2-homologous domain profile.	24	128	IPR002902	-
	Pral6027g00001	607	CDD	STKc_IRAK	294	558	-	-
	Pral6027g00001	607	Pfam	Salt stress response/antifungal	154	238	IPR002902	-
	Pral6027g00001	607	Pfam	Salt stress response/antifungal	34	124	IPR002902	-
	Pral6027g00001	607	ProSiteProfiles	Protein kinase domain profile.	288	570	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral6027g00001	607	FunFam	Cysteine-rich RLK (RECEPTOR-like protein kinase) 23	258	363	-	-
	Pral6027g00001	607	SUPERFAMILY	Protein kinase-like (PK-like)	272	592	IPR011009	-
	Pral6027g00001	607	Pfam	Protein kinase domain	289	553	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral6027g00001	607	SMART	serkin_6	288	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral6027g00001	607	Gene3D	Phosphorylase Kinase; domain 1	263	363	-	-
	Pral6027g00001	607	PANTHER	PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA	262	595	-	-
	Pral6027g00001	607	Gene3D	Transferase(Phosphotransferase) domain 1	364	563	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral6027g00001	Pral-Chr6027	19100	22356	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral6027g00001	40	599	Receptor kinase-like Gene Family	AT3G45860	41.997	2.85e-162	478

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_DLSV	Pral6027g00001		Pkinase	7.6e-52	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral6027g00001	-		-	mtr:25479483	543.117