Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6022g00009 ATGGGGCCTCGCCGTAGAAATTTCGTCCGGCCATTGGGGTCTCCGGCTGATGCTGAATCCAGCCACTTCTTGAAGATCATACTTCCTGAAACTATTCGTGCCCAAAAACTGAGAATTCCCAAGGAGTTCGCAAGAAGATATGAGAATGAACTGTCTACTGGTGAGGCAACGATTGGTATACCAGATGGTTGTATCTGGAGAATGGAACTGAAGAAATCTGAAAACGAGGTGTGCTTCGGCAAGGGTTGGCGGGAATTTGTGAAGTACTACTCCATTAAATTTGGCTTCATTTTAGCGTTTAAATATGAAGGCAATTCACACTTCTCTTTGGTTATCTTTGATGTGAGTGCTGCTGAGATTCACTATCCACTATGCAAAGATAACTCTGAGAAGCAGAACTTGGAATCCAAATGTCCTGGAAAAAAGTCCAGCTTTAATCACTGTAGCTACAACACAAGACGCAAAAGGCATGAGCTTGAAGATCAAGAAGAAATAATCGACATAGATTGTGCGAATGATCTGAGCCCTGGAAAACTAGGAAACAACAAAAGTTATAATTCTGCCGAGAATTCAAGAAAGCAAGAGAGAAACCGATCTGGGCCAGGCCGTTCTTCCAAAATGATGAAGAAAACTTTGAGTAGAAAGCAGAGAGCTATAAGAGCTGCCCAAATTTCCAACCAAAAAAACCATCCTTTACTGCAATAA 705 0.4199 MGPRRRNFVRPLGSPADAESSHFLKIILPETIRAQKLRIPKEFARRYENELSTGEATIGIPDGCIWRMELKKSENEVCFGKGWREFVKYYSIKFGFILAFKYEGNSHFSLVIFDVSAAEIHYPLCKDNSEKQNLESKCPGKKSSFNHCSYNTRRKRHELEDQEEIIDIDCANDLSPGKLGNNKSYNSAENSRKQERNRSGPGRSSKMMKKTLSRKQRAIRAAQISNQKNHPLLQ 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6022g00009 234 CDD B3_DNA 22 114 IPR003340 GO:0003677
Pral6022g00009 234 SUPERFAMILY DNA-binding pseudobarrel domain 19 116 IPR015300 -
Pral6022g00009 234 MobiDBLite consensus disorder prediction 218 234 - -
Pral6022g00009 234 PANTHER B3 DOMAIN-CONTAINING 17 222 - -
Pral6022g00009 234 MobiDBLite consensus disorder prediction 179 234 - -
Pral6022g00009 234 ProSiteProfiles B3 DNA-binding domain profile. 22 116 IPR003340 GO:0003677
Pral6022g00009 234 SMART B3_2 23 116 IPR003340 GO:0003677
Pral6022g00009 234 Pfam B3 DNA binding domain 29 112 IPR003340 GO:0003677
Pral6022g00009 234 Gene3D - 14 117 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6022g00009 Pral-Chr6022 47879 49471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6022g00009 23 122 B3 DNA Binding Superfamily AT3G18990 46.000 5.44e-28 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pral6022g00009 B3 1.4e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6022g00009 - - pcin:129315065 252.292