Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6014g00001 ATGGGTTTAATCAGCAGTATCTTGGGCATTCTTGGTTTCTCCATTGGAATTCCTCTCGGTCTCTTGGTGGGATTTTTCCTCTTCGTTTACTCCGAACCCAAAGAAGTGGAGGAAACAGAGGTCGTTCCAATTAGCGATTTAGGCCCAAATGCTTTGCAAGAACTTCTCTCCGAAATTCCTTTGTGGATGAAGAGCCCCGATTATGAACGAGTGGACTGGATGAACAAATTTTTATTATATATGTGGCCTTCACTTGATAAGGCAATATGTCGTATGATTGAAAGCATGGCTAAGCCAATATTTGCAGAATATATAGGGAAGTATCAGATTAAAAGCATTGAATTTGAGAATTTAAGCCTTGGTACTCTTCCTCCTACCATATGCGGCATTAAAGTCTTCGAGACAAATGAAAATGAATTGATTATGGAACCAATCATCAAATGGGCTGGCAATCAGAATGTAGTGGTGGCTTTGAAGTTGTTGTCTCCACGGATCAAGGTTCAGGTGGTAGAGCTACAAGTATTTGCAGCACCACGAATAACTTTAAAACCTTTAGTGCCTACATTTCCATGTTTTGCAAACATTGTCGTGTCATTATTGGAGAAGCCTCATGTAGACTTCGGGATGAAAATATCAGGAGGTGACATCATGTCAATTCCTGGTCTTTACAGATATGTTCAGGAAACAATCAAAAAACAAGTTGCAAACCTCTATCTCTGGCCTCAAACTCTTGAGATTCCTATTCTTGATGAATCATCGGTGGCAATAAAGAAGCCTGTAGGGATATTACATGTGAATGTGATTCGGGCAGTGAAGCTTTTGAAGATGGATTTGTTGGGGACTTCTGATCCATATGTCAAACTCAGTCTTTCTGGGGACAAGCTTCCAGCAAAGAAAACCACCATCAAAAGGAGGAATTTGAATCCCGAGTGGAACGAGAAGTTCAAGCTTGTTGTGAAGGACCCTGAATCTCAGGTTCTCCAATTGCAAGTCTTCGACTGGGATAAGGTCGGCGGACATGACAGGCTTGGGATGCAGTTAATCCCACTTAAGCTGTTGAAGCCTTGTGAGAGCAAGGAATTCACACTTGATTTACTCAAGGACAATGTCTCGGAGCCTCCAAATAAGAAGCCAAGAGGTCAAAGTGTGGACCTTACTTTTGCTCCTTTCAGAGAAGAAAGTAGCAAATTTGGTGGGCATCTGGAAAATGGGAGTGATAGAGTATCTGATGATGATGTCCAAGGAGCGGGTTTGCTTTCTGTTCTGATACAGGAGGCTGAGGAGGTTGAGGGTAAAAGCCACAACAATCCATACGCACTGGTTTTCTTTAGAGGTGAAAGGAAAAAGACAAAGATGATGAGGAAAACTCGTGACCCAAGGTGGAACGAAGAATTTGAATTTATGCTAGAGGAGGCTCCTCTACATGAGAAGATACACATTGAAGTAATGAGTAGGAGGACCTTTTTCAGTTTTCTGTCCAAGGAATCATTGGGGCATGTGGAGATTAACCTGAATGATGTTGTGCACAATGGTCGGATTAATGATAAATACAATCTAATTAATTCAAGGAATGGAGTGATCCATGTTGAGATCAGATGGAAGGTGATTTAA 1611 0.4153 MGLISSILGILGFSIGIPLGLLVGFFLFVYSEPKEVEETEVVPISDLGPNALQELLSEIPLWMKSPDYERVDWMNKFLLYMWPSLDKAICRMIESMAKPIFAEYIGKYQIKSIEFENLSLGTLPPTICGIKVFETNENELIMEPIIKWAGNQNVVVALKLLSPRIKVQVVELQVFAAPRITLKPLVPTFPCFANIVVSLLEKPHVDFGMKISGGDIMSIPGLYRYVQETIKKQVANLYLWPQTLEIPILDESSVAIKKPVGILHVNVIRAVKLLKMDLLGTSDPYVKLSLSGDKLPAKKTTIKRRNLNPEWNEKFKLVVKDPESQVLQLQVFDWDKVGGHDRLGMQLIPLKLLKPCESKEFTLDLLKDTXVSEPPNKKPRGQIXVDLTFAPFREESSKFGGHLENGSDRVSDDDVQGAGLLSVLIQEAEEVEGKSHNNPYALVFFRGERKKTKMMRKTRDPRWNEEFEFMLEEAPLHEKIHIEVMSRRTFFSFLSKESLGHVEINLNDVVHNGRINDKYNLINSRNGVIHVEIRWKVI 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6014g00001 538 Gene3D C2 domain 256 409 IPR035892 -
Pral6014g00001 538 SMART C2_3c 262 362 IPR000008 -
Pral6014g00001 538 SMART C2_3c 420 518 IPR000008 -
Pral6014g00001 538 FunFam Extended synaptotagmin-2 420 537 - -
Pral6014g00001 538 ProSiteProfiles C2 domain profile. 404 519 IPR000008 -
Pral6014g00001 538 CDD SMP_SYT 60 248 - -
Pral6014g00001 538 Pfam C2 domain 261 354 IPR000008 -
Pral6014g00001 538 Pfam C2 domain 420 521 IPR000008 -
Pral6014g00001 538 ProSiteProfiles C2 domain profile. 240 363 IPR000008 -
Pral6014g00001 538 ProSiteProfiles Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. 67 249 IPR031468 GO:0008289
Pral6014g00001 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 256 393 IPR035892 -
Pral6014g00001 538 CDD C2 421 518 - -
Pral6014g00001 538 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 419 535 IPR035892 -
Pral6014g00001 538 Pfam Synaptotagmin-like mitochondrial-lipid-binding domain 67 248 IPR039010 -
Pral6014g00001 538 FunFam Synaptotagmin-2 isoform A 256 411 - -
Pral6014g00001 538 PANTHER EXTENDED SYNAPTOTAGMIN-RELATED 5 535 IPR045050 GO:0008289
Pral6014g00001 538 Gene3D C2 domain 420 538 IPR035892 -
Pral6014g00001 538 CDD C2 263 365 - -
Pral6014g00001 538 PRINTS C2 domain signature 327 335 IPR000008 -
Pral6014g00001 538 PRINTS C2 domain signature 278 290 IPR000008 -
Pral6014g00001 538 PRINTS C2 domain signature 305 318 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6014g00001 Pral-Chr6014 7327 12309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6014g00001 260 344 C2H2 Transcription Factor Family AT4G05330 39.535 9.89e-09 55.5