Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6010g00002 ATGTGCCTAGCAGAAGGGAGATTGAAAGTCCACTATGATGGGTCTTATGAAGGTGAAACTGATGCTATTGCTATTGGAATTGCTGTTATATTGGCAAAAGATTTGGAATTGACCAATATGACCTTTGAAGTGGATTATGCTGAGGTTTGTTGGTGCTGCAAAAAGAATTCTATTGATGATGTGGATTTGAAGGCTAAGTGGCAGATGCAGACTGTCTTGGTGGCTTTAGCAGAGTTTGATGGAGCGGATATTACCCTTAAATCTAGAGAGGGGCGTACTGAGACAACAAATTGGATTGCTGTTGAGTGTAGAAAAGGGGTGTGCCCTATAAGCTGCTGCGTCATTCTCTCAGTATGGCTCCTCAGCCTCCCTTTCTCTCTGCCTACTACCATCAGGGCTGCCTTCAACCCTGAACATGTGGTTATGGATGTTCAAAGGAGAATCAACGCGTCTCTCTCCAGAAGACAGCTCCTCTCCGTTGACAAATCCGACCAAACTCCAGGCTGCCTCACCGGCAACCCTATCGACGACTGCTGGCGGTGCAACCCCAACTGGGCCACCGACCGCCAGAAGCTGGCCGACTGTGGTATTGGGTTCGGCACCGATGCTGCCGGCGGCAAGGGCGGCCAGTTCTACATCGTCACTGACCCTTCCGACAACGACCCGGTGAACCCAGCTCCGGGAACTCTTCGGCACGCCGTAATCCAAGATGTGCCCCTCTGGATCGTCTTCGCTGGCAACATGATGATCACCCTGAAGCACGAGCTCATGTTCAACAGCTTCAAGACCATCGACGGACGTGGAGCCAGCGTCCACATCACCGGCGACGGCTGCATCACCCTGCAGTACGTCTCCAACATCATCATTCACAACGTGCACATCCACCACTGCAGGCCGTCGAGCAAGACAATGATACGGGCTAGTCCAACAAAGGTAGGATTGAGAGGGGGATCGGACGGCGACGGGGTGTCCATCTATGGGTCACAGAAGATTTGGATAGACCATTGCAGGCTGGCGTACTGCACGGACGGCCTAATAGATGCGATAATGGGGTCGACGGGGATAACGATATCGAACAACCATTTCTCGCATCACGACGAGGTGATGCTGCTGGGGCACGATGATAGGTATGAAGGGGATAGGATGATGCAGGTGACAGTAGCATTCAATCATTTCGGGGAGAAGCTGGTGCAGCGGATGCCACGGTGCAGACACGGGTACGTGCACGTGGTGAACAACGATTACACGCAGTGGGAGATGTACGCGATCGGCGGCAGTGCGGCGCCCACCATAAACAGCCAGGGCAACCGCTACACTGCTCCCGCCAATGCTAATGCTAAAGAGGTCACGAAGCGAGTGGACACAGATGAGAGAGAGTGGGCGACTTGGAATTGGAAGACGGAGGGGGACTTAATGGTGAACGGAGCATACTTCGTGGGATCGGGAGATTGGGTGAGCACCCAATACGCCCAGGACTCGTCTCTGCCACCGCAATCCGCCCTTCACATCGACCTCCTCACCCTCAACGCCGGCGTCTTCAATGATCCCAGCGAAAGCGGGGATATATATCCTGCGTTCACGGAGAACGACGGCAGTGGCATTTCTGGAGACGGGATCATGCCCAGGCATGGCAGCACCAACAATGCTTCACTCCTGTCTCCATTATTTTCATTTCTCCTTTTCTGCACTATTGCATCTACTGTTATATTAATATTGATGAGTCTGTATTAA 1731 0.5269 MCLAEGRLKVHYDGSYEGETDAIAIGIAVILAKDLELTNMTFEVDYAEVCWCCKKNSIDDVDLKAKWQMQTVLVALAEFDGADITLKSREGRTETTNWIAVECRKGVCPISCCVILSVWLLSLPFSLPTTIRAAFNPEHVVMDVQRRINASLSRRQLLSVDKSDQTPGCLTGNPIDDCWRCNPNWATDRQKLADCGIGFGTDAAGGKGGQFYIVTDPSDNDPVNPAPGTLRHAVIQDVPLWIVFAGNMMITLKHELMFNSFKTIDGRGASVHITGDGCITLQYVSNIIIHNVHIHHCRPSSKTMIRASPTKVGLRGGSDGDGVSIYGSQKIWIDHCRLAYCTDGLIDAIMGSTGITISNNHFSHHDEVMLLGHDDRYEGDRMMQVTVAFNHFGEKLVQRMPRCRHGYVHVVNNDYTQWEMYAIGGSAAPTINSQGNRYTAPANANAKEVTKRVDTDEREWATWNWKTEGDLMVNGAYFVGSGDWVSTQYAQDSSLPPQSALHIDLLTLNAGVFNDPSESGDIYPAFTENDGSGISGDGIMPRHGSTNNASLLSPLFSFLLFCTIASTVILILMSLY 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6010g00002 576 SMART amb_all 247 444 IPR002022 -
Pral6010g00002 576 FunFam Pectate lyase 172 514 - -
Pral6010g00002 576 Gene3D - 172 514 IPR012334 -
Pral6010g00002 576 PRINTS Pollen allergen Amb family signature 195 212 IPR018082 -
Pral6010g00002 576 PRINTS Pollen allergen Amb family signature 319 340 IPR018082 -
Pral6010g00002 576 PRINTS Pollen allergen Amb family signature 492 515 IPR018082 -
Pral6010g00002 576 PRINTS Pollen allergen Amb family signature 421 440 IPR018082 -
Pral6010g00002 576 PRINTS Pollen allergen Amb family signature 255 271 IPR018082 -
Pral6010g00002 576 PRINTS Pollen allergen Amb family signature 399 418 IPR018082 -
Pral6010g00002 576 PRINTS Pollen allergen Amb family signature 463 487 IPR018082 -
Pral6010g00002 576 PRINTS Pollen allergen Amb family signature 219 244 IPR018082 -
Pral6010g00002 576 SUPERFAMILY Pectin lyase-like 173 512 IPR011050 -
Pral6010g00002 576 PANTHER PECTATE LYASE 18-RELATED 136 514 IPR045032 GO:0030570
Pral6010g00002 576 Pfam Pectate lyase 254 434 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6010g00002 Pral-Chr6010 10903 14960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6010g00002 113 574 Polysaccharide Lyase AT3G53190 57.917 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6010g00002 K01728 - gmx:100808438 615.15