LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral600g00010	ATGACTCTGGCTTTCGCAGCATTGACCTTACGCTTATCACCAATGGGATCTTGGAAGCTCATCCCTCGCTGTTCACTCTTGCTTTCCATGCAGACCACCACTCCTTCCTTCGCTCGCCAGATGAGCATGGATGCAAAAAGTGTTGCTTCTCAGCTTAATAGTTCTGGCCTGTTGCGGACTCAGGGCCTTGTTGGAGGCAAATGGAGTGATGCCTACGATGGCAAAACCATAAAGGTTTATAATCCAGCTACTGGTGAATCTATAGCAGATATTGCATGCATGGGTGGAAGAGAGACGAACGATGCGATATCCTCAGCCTATGATGCATATCAATCTTGGAGCAAAACCACTGCTGCTGAGAGGGGTAAACTTCTGAGAAAATGGTATGATTTGCTAATGGCACACAAGGAAGAGCTTGCAAAACTTATAACCTTAGAGCAAGGAAAGCCTCTTAAAGAATCTATTGCTGAGGTAAATTATGGGGCTAGTTTTATTGAGTTTTCAGCAGAGGAGGCAAGGCGTGTATATGGAGATATAATTCCTGCACCACTATCTGATCGACGAATATTTGTTTTAAAACAGCCTGTAGGGGTTGTTGGTGCTATCACACCTTGGAACTTTCCTTTGGCTATGATTACCCGAAAGGTCGGTCCAGCCCTTGCATGTGGCTGTACAGTGGTCGTTAAGCCCTCTGAACTTACTCCTCTCACAGCTTTGGCTTCAGCAGAGCTTGCGATTCAAGCTGGAATACCAGCGGGTGTTGTGAATGTAGTTATGGGAAATGCTCCTGAAATTGGGGATGCTATACTTGCAAGTCCGCAGGTAAGGAAAATCACATTTACCGGCTCAACTGCAGTTGGAAAAAAGTTGATGGCAGGTGCTGCTGGAACAGTTAAAAGAGTATCTCTGGAACTTGGTGGCAATGCCCCTTGCATAATATTTGATGATGCTGATCTTGATGTGGCAGTAAAAGGAACTGTTGCAGCAAAGTTCCGTGCTAGTGGACAAACATGTGTATGTGCAAATAGAATTCTAGTGCAAGAAGGTATCTATGAGAAATTTGCAACTCTTCTCCTTGATGCTGTTAAGAATATGAAAGTTGGGGACGGTTTTAGTGAAGGTGTGGTTCAGGGACCTCTAATCAATGAAGCTGCTGTGCAAAAGGTTGAATCTTTACTTCATGATGCCATCTCCAAGGGGGCAAAAGTAATTCAAGGGGGCAAAAGACACAGCCTTGGATTAACTTTTTATGAACCTACAGTCGTCACTGATGTCAACAATGAGATGCGCATATCAAGAGAGGAAGTATTTGGACCAGTTGCTCCTCTTCTGAGATTTAAAACTGAGGAGGAGGCCATCAAAATCGCCAACGACACTAATGCAGGGTTGGGTTCATATATCTTTACAAACGATGTTCAACGCTCTTGGCGTGTTGCTGAGGCTCTTGAATACGGACTCGTCGGTGTAAATGAAGGAATAATTTCAACAGAGGTTGCTCCTTTTGGCGGTGTTAAACAGTCTGGCCTTGGAAGAGAAGGCTCCAAATATGGCATGGATGAATATTTGGAGATCAAATATGTCTGCTTGGGAAACATGAACAAAGACTGA	1608	0.4428	MTLAFAALTLRLSPMGSWKLIPRCSLLLSMQTTTPSFARQMSMDAKSVASQLNSSGLLRTQGLVGGKWSDAYDGKTIKVYNPATGESIADIACMGGRETNDAISSAYDAYQSWSKTTAAERGKLLRKWYDLLMAHKEELAKLITLEQGKPLKESIAEVNYGASFIEFSAEEARRVYGDIIPAPLSDRRIFVLKQPVGVVGAITPWNFPLAMITRKVGPALACGCTVVVKPSELTPLTALASAELAIQAGIPAGVVNVVMGNAPEIGDAILASPQVRKITFTGSTAVGKKLMAGAAGTVKRVSLELGGNAPCIIFDDADLDVAVKGTVAAKFRASGQTCVCANRILVQEGIYEKFATLLLDAVKNMKVGDGFSEGVVQGPLINEAAVQKVESLLHDAISKGAKVIQGGKRHSLGLTFYEPTVVTDVNNEMRISREEVFGPVAPLLRFKTEEEAIKIANDTNAGLGSYIFTNDVQRSWRVAEALEYGLVGVNEGIISTEVAPFGGVKQSGLGREGSKYGMDEYLEIKYVCLGNMNKD	535

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral600g00010	535	SUPERFAMILY	ALDH-like	56	533	IPR016161	GO:0016491
	Pral600g00010	535	NCBIfam	succinate-semialdehyde dehydrogenase	79	525	IPR010102	GO:0009013\|GO:0009450
	Pral600g00010	535	ProSitePatterns	Aldehyde dehydrogenases glutamic acid active site.	303	310	IPR029510	GO:0016491
	Pral600g00010	535	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 2	307	496	IPR016163	GO:0016620
	Pral600g00010	535	PANTHER	SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL	53	532	-	-
	Pral600g00010	535	FunFam	Aldehyde dehydrogenase, putative	499	525	-	-
	Pral600g00010	535	Gene3D	Aldehyde Dehydrogenase; Chain A, domain 1	74	521	IPR016162	GO:0016491
	Pral600g00010	535	CDD	ALDH_F5_SSADH_GabD	79	529	-	-
	Pral600g00010	535	FunFam	Succinate-semialdehyde dehydrogenase I	74	317	-	-
	Pral600g00010	535	ProSitePatterns	Aldehyde dehydrogenases cysteine active site.	331	342	IPR016160	GO:0016491

Showing 1 to 10 of 12 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral600g00010	Pral-Chr600	63469	80173	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral600g00010	24	534	Aldehyde Dehydrogenase Gene Family	AT1G79440	78.210	0.0	818

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral600g00010	K17761		-	gmx:100808318	908.286

Showing 1 to 1 of 1 entries