Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral6000g00003 ATGGATTATTCGTCGTTGGTTAACACTTCCTTGGACCTCAACCTTAATCCTAATTCAGGAGTCAATGAAGAGATTCCTAAAAAGGAGGTGGAAAGCAACTTTTTTGCATTAGAATTGAAGTCGTTTCCTTCAAGACAAGAGGCGAATGGTGATCTGGAGGAGGAATTGAAGAGGGTGAGTGCAGAAAACAAGAAGCTGACTGACATGCTCACAGAGATGTGTGATAATTACAATACTTTGAGGAACCATTTCTCTGAATATATGAGAAAGAACAGTAATTCAGAAAAGGAGATGAGCCCACCAAAGAAGAGGAAATCTGAAAGCAGCAATAACAATGGCAATCCAACTGGGGCTGATGGAAACAATAACTCAGAGAGCAGCTCAACTGATGAAGAATCAAGCAAGAAACCAAGACAAGAGATCATCAAAGCAAAAATCTCTAAACTTTATTTCAGAACACCAGCATCTGACACATCCCTTATTGTGAAAGATGGATATCAGTGGAGGAAATATGGGCAAAAGGTGACCAGAGACAACCCTTGCCCAAGAGCGTATTTCAAATGCTCTTTTGCTCCCTCTTGCCCTGTCAAAAAGAAGGTTCAAAGAAGTGTGGATGATCAGTCCACTGTGGTGGCAACTTATGAAGGAGAGCATAATCATCCACAGCCTTCTCAAATGGAGGCAACAGGATCAGGTTCAAGCCGAGGCCTAACATCATCTTCTCTGCGGCCTTCTCCTCCAAAAGTTACAGTTGACATGGCAAGGTCTAAGTCCTTCAATGAATCCACACACTCACTGCCAAAGCTTGATTCGTCTGAAGTCCCTCAGGTTTTGGTGGAACAGATGGCTACCTCGTTAACCAAGGATCCCAATTTCAGATCAGCACTTTTAGCAGCCATTTCAGGAAGAGTGTCGCACAAGAATTAG 927 0.4283 MDYSSLVNTSLDLNLNPNSGVNEEIPKKEVESNFFALELKSFPSRQEANGDLEEELKRVSAENKKLTDMLTEMCDNYNTLRNHFSEYMRKNSNSEKEMSPPKKRKSESSNNNGNPTGADGNNNSESSSTDEESSKKPRQEIIKAKISKLYFRTPASDTSLIVKDGYQWRKYGQKVTRDNPCPRAYFKCSFAPSCPVKKKVQRSVDDQSTVVATYEGEHNHPQPSQMEATGSGSSRGLTSSSLRPSPPKVTVDMARSKSFNESTHSLPKLDSSEVPQVLVEQMATSLTKDPNFRSALLAAISGRVSHKN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral6000g00003 308 MobiDBLite consensus disorder prediction 91 138 - -
Pral6000g00003 308 SUPERFAMILY WRKY DNA-binding domain 158 223 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral6000g00003 308 MobiDBLite consensus disorder prediction 215 269 - -
Pral6000g00003 308 Coils Coil 49 69 - -
Pral6000g00003 308 SMART WRKY_cls 162 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral6000g00003 308 MobiDBLite consensus disorder prediction 105 128 - -
Pral6000g00003 308 ProSiteProfiles WRKY domain profile. 157 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral6000g00003 308 Pfam WRKY DNA -binding domain 163 221 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pral6000g00003 308 MobiDBLite consensus disorder prediction 215 246 - -
Pral6000g00003 308 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 46 304 IPR044810 GO:0003700
Pral6000g00003 308 FunFam WRKY transcription factor 40 147 224 - -
Pral6000g00003 308 Gene3D WRKY domain 147 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pral6000g00003 308 MobiDBLite consensus disorder prediction 255 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral6000g00003 Pral-Chr6000 40959 42913 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral6000g00003 4 308 WRKY Transcription Factor Family AT1G80840 49.057 3.33e-95 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pral6000g00003 WRKY 5.2e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral6000g00003 - - gsj:114388658 395.201