Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5999g00003 ATGTTTCTGATATTATACTTTGGAACTTGTACTAAGGCCCGAGAGTATGAACTTCAATACATACTCCAGGATAAAGGTGTTCTTCTTACAACATACGATATTGTTCGCAATAATTCTAAATCATTACGGGGGAATTATCTATCTGATGATGAGGAAAATGAAGGTCCCATATGGGATTATATGATACTTGATGAGGGCCATCTTATAAAGAATCCCAGCACACAAAGAGCTAAAAGTTTGCTACAGATACCAAGTGCCCATCGCATAATCATCAGTGGCACGCCATTGCAAAATAATCTTAAGGAGCTGTGGGCCTTGTATTTCTGCTGCCCTGAGTTGCTGGGTGATAAGCAATG 356 0.3961 MFLILYFGTCTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGNYLSDDEENEDXPIWDYMILDEGHLIKNPSTQRAKSLLQIPSAHRIIISGTPLQNNLKELWALFXFCCPELLGDKQ 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5999g00003 120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 119 IPR027417 -
Pral5999g00003 120 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 114 IPR014001 -
Pral5999g00003 120 PANTHER SNF2/RAD54 FAMILY MEMBER 8 120 - -
Pral5999g00003 120 Gene3D - 2 120 IPR038718 -
Pral5999g00003 120 Pfam SNF2-related domain 19 118 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5999g00003 Pral-Chr5999 20227 21980 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5999g00003 23 110 RAD5 or RAD16-like Gene Family AT1G02670 36.170 2.96e-12 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pral5999g00003 SNF2_N 2.4e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5999g00003 K20093 - qsu:112008966 211.46