Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5996g00009 ATGGTCAGTTTTGTGACTGCAGTGGAACCTCCTTCACATTCTCAAGTTATTCAGGTTTCCATGGCCCAGCTCAGTGGCTTCGGAGGATTTAAGTTTTTTGTGGTAGTCTTAGTAGTACTCATAATACTGTTGATCCTTGTGTTTCTGTGTCGGAAGCGTATCAAACCGGCATTGCAGGCAAAGCCAAAACCTCCGATGGAGGTAATGAAGATAATAGCTTCTTCAAAGAAGCAGCAAGGATCAGCAGACTTTTTTAGTGGCAGCGTTCAGGAAATGAGTTATTTTGACTATCAGACCCTGAAGAAGGCAACAATGAATTTTAATCCTGATAATCTTCTTGGAAGTGGTGGATATGGTCCTGTCTTTAGGGGGAAGTTGGCAGATGGAAGGCTAATTGCAGCGAAGACATTGAATCTGAACAAAGCACAACAAGGAGAAAAACAATTTCTGGCAGAAGTGAGACTCATTACAAGCATCCAACACAAAAATCTTGTTCGTCTCCTAGGATGCTGCATTGATGGGCCTCAAAGAATCCTTGTGTATGAATACATGAAGAACAGAAGTTTGGACCTCATAATCAATGCAGACAATAATCAGTTTCTGGATTGGAGCACTAGGTTCCAAATCATCCTTGGAATTGCACGGGCATTACAATACCTGCACGAGGATTCACACATGAGAATCGTTCACAGAGATATCAAAGCAAGCAATATTCTCCTTGATGACAAGTTTCACCCCAAGATCGGAGACTTTGGACTGGCTAGGTTCTTCCCCGAAGACCAAGATTGCCTCAGTACTCAGTTTGCTGGAACATTAGGTTATACGGCTCCTGAATATGCTACTAGAGGGGAACTATCAGAAAAGGTAGACATATACAGTTTTGGAGTTCTATTGCTTGAAATTATCAGTTGCAGAAAGAACACAGATTTTACTCTACCGTCAGAAATGCAGTACCTTCCTGAATACGCATGGAAGCTTTATGAGAAATCGATGCTGATGGATCTGGTAGATCCGAAACTGCGAGCGCACGGTTTTGCAGAGAAGGATGTAATGCAAGCAATTCATGTGGCATTGTTGTGTCTTCAATCTAGTGCAAATCTGAGGCCTCCCATGTCAGAAATTGTAGCATTGTTAACCTTCAAAATTGAAATGGTCACGACTCCAATGAGACCGATATTCCTTGATCGAAGGCATAAAATGGCTGCTGATGATTATGATGACGATGATGATGATGATTATGAGAATTAA 1248 0.4175 MVSFVTAVEPPSHSQVIQVSMAQLSGFGGFKFFVVVLVVLIILLILVFLCRKRIKPALQAKPKPPMEVMKIIASSKKQQGSADFFSGSVQEMSYFDYQTLKKATMNFNPDNLLGSGGYGPVFRGKLADGRLIAAKTLNLNKAQQGEKQFLAEVRLITSIQHKNLVRLLGCCIDGPQRILVYEYMKNRSLDLIINADNNQFLDWSTRFQIILGIARALQYLHEDSHMRIVHRDIKASNILLDDKFHPKIGDFGLARFFPEDQDCLSTQFAGTLGYTAPEYATRGELSEKVDIYSFGVLLLEIISCRKNTDFTLPSEMQYLPEYAWKLYEKSMLMDLVDPKLRAHGFAEKDVMQAIHVALLCLQSSANLRPPMSEIVALLTFKIEMVTTPMRPIFLDRRHKMAADDYDDDDDDDYEN 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5996g00009 415 Gene3D Transferase(Phosphotransferase) domain 1 184 387 - -
Pral5996g00009 415 Pfam Protein kinase domain 110 304 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5996g00009 415 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 35 401 - -
Pral5996g00009 415 FunFam Cysteine-rich receptor-like protein kinase 10 71 183 - -
Pral5996g00009 415 CDD STKc_IRAK 113 379 - -
Pral5996g00009 415 SMART serkin_6 107 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5996g00009 415 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 184 388 - -
Pral5996g00009 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 228 240 IPR008271 GO:0004672|GO:0006468
Pral5996g00009 415 ProSiteProfiles Protein kinase domain profile. 107 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pral5996g00009 415 SUPERFAMILY Protein kinase-like (PK-like) 88 381 IPR011009 -
Pral5996g00009 415 Gene3D Phosphorylase Kinase; domain 1 67 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5996g00009 Pral-Chr5996 40050 42148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5996g00009 95 394 Receptor kinase-like Gene Family AT1G56120 49.667 3.17e-99 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Pral5996g00009 Pkinase 1.9e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5996g00009 - - gmx:100799624 558.525