Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5996g00001 ATGATACCAACTTATCGCTGTTCACCAGCTGTGTCTTCTTCCATGTCTCATCAAAGCCATATTCAACCCTCTTCTTCATCTTCTTATCCTCCTGATGACCCCCATCATGATCAGTCACTGAATCGCTTGCAAACTTCTTATCACCAGGATATGATCCCAGATGCAGACCAGTGGAAGAAAGAGGATAAGAATGATCAAGTTAAGGAAGGATCAAGCAAGTGGAAGCCTTCAAAGATGAGAATGATGGTTCGGGAACAAAGTAAGCAGAGGTTTGAAGATCATCATCATCATCAGAAGCCCTTATCATCATCATCATTATCCTCATCAACTGACCATAATAACATGTGCAATAGAGCTTGTTCCTCGGATCAAACGTCTCATATCGGTGTTAGGGTTTGTGCTGATTGCCAGACCACTAAGACCCCTCTCTGGAGGAGCGGACCAACAGGCCCTAAGTCACTTTGCAACGCGTGTGGAATTCGGCAAAGGAAGGCGAGGCGTGCCATGGCGGCGGCGGCGGCTTCTGCTCCGGTGAGGGAAAACAAGGTACAGAAGAAACAGGAGAAGAAGCCACTGTTGAAGAAGAAGAAGAAGAAGAAGCGAAAGCTTGGAGTAGTGAAGGCATGTGGAGGTAGAAAGAAGCCTGTTTTGGAGGATTTTGCTACGAGGTTGAGCAAGAGCTTGTCTGCGCAACAAGTTCTATTCCCTCAGGACGAGAAGGAAGCTGCTATTCTGCTCATGGCTTTATCTTGTGGTCTTGTTCGTGGATAA 771 0.4656 MIPTYRCSPAVSSSMSHQSHIQPSSSSSYPPDDPHHDQSLNRLQTSYHQDMIPDADQWKKEDKNDQVKEGSSKWKPSKMRMMVREQSKQRFEDHHHHQKPLSSSSLSSSTDHNNMCNRACSSDQTSHIGVRVCADCQTTKTPLWRSGPTGPKSLCNACGIRQRKARRAMAAAAASAPVRENKVQKKQEKKPLLKKKKKKKRKLGVVKACGGRKKPVLEDFATRLSKSLSAQQVLFPQDEKEAAILLMALSCGLVRG 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5996g00001 256 ProSitePatterns GATA-type zinc finger domain. 133 158 IPR000679 GO:0006355|GO:0043565
Pral5996g00001 256 MobiDBLite consensus disorder prediction 7 51 - -
Pral5996g00001 256 ProSiteProfiles GATA-type zinc finger domain profile. 131 163 IPR000679 GO:0006355|GO:0043565
Pral5996g00001 256 MobiDBLite consensus disorder prediction 174 201 - -
Pral5996g00001 256 MobiDBLite consensus disorder prediction 1 110 - -
Pral5996g00001 256 MobiDBLite consensus disorder prediction 53 100 - -
Pral5996g00001 256 Pfam GATA zinc finger 133 166 IPR000679 GO:0006355|GO:0043565
Pral5996g00001 256 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 17 255 - -
Pral5996g00001 256 SMART GATA_3 127 179 IPR000679 GO:0006355|GO:0043565
Pral5996g00001 256 Gene3D - 130 204 IPR013088 GO:0006355|GO:0008270
Pral5996g00001 256 FunFam GATA transcription factor 21 127 208 - -
Pral5996g00001 256 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 130 168 - -
Pral5996g00001 256 CDD ZnF_GATA 132 160 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5996g00001 Pral-Chr5996 7315 8856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5996g00001 65 256 C2C2-Gata Transcription Factor Family AT4G26150 38.393 4.24e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pral5996g00001 GATA 1.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5996g00001 - - pcin:129310140 177.563