LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pral5993g00004	ATGCTTTCCCTCCAATGCAGCAGCAGGCATCATCATCATCAGCCACCACGCCGCCAAAAGCTTGACATGAATCGCCGACCATGCATCCCCGTCTCTGCCACCGTCGCCGCCTTCATATGCTTTCTGCAACTTCTCTTCCCGGCGGCCAAGTCCCAATCCCAGAACATGAAAACTGACCGATACGTCTTCGGCCCCTTCGACGTCTCTTACTACACAACCTTCAAAGTCATTCCTCCGGCGTCGATCAACTTCGGAGCCCTCCAAGTAACTCCCGACACCGCCGGCAACGTCAACCTCACTGACACCTACGGCCGAATCCTTTTCCGGAAACCCTTCAACCTCTGGGAAGACACCGGAAAAGTTGCTTCCTTCAACAGTTCATTCCTCATCAACGTCTATCGCGTCAACAACGCCACTCCCGGCGAAGGAGTCGCCTTCTTCATTGCCTCATCTCTTGACATTCCCCGAAACAGCCATGGCCAATACCTCGGCCTCACCAACTCCACCACCGACGGCAATCCCGACAACCACATCGTTGCAGTCGAACTAGACACCGTCAAGCAAGACTTCGACCCCGACGACAACCACATCGGACTTAACATCAACAGCGTCAAATCAAAAACCACTGTCTCCCTGTCTCAATACGGAATGGAGATCGCTCCAAAGGGTGCCAAATACTATGTAATCTGGATAGACTACAACGGTTCAAGCAAGGAAATTAACGTATTCATCAAAGAACAACCTGACAGAAACGCACCTATAGTATCGAAACCTGAAGAACCAGTGTTAACTTCAGATCTAGATCTCAAAAACATCGTGAAACAGAGCTCTTACTTCGGGTTCTCTGCCTCAACAGGAACAACCTACCAGCTAAACTGTGTTCTGAGATGGAACCTGACAGTGGAGATTCTTTCAGAAAACAAGAACAAGTCGCGATCTTTGAAGATGGGTTTGGGTATTGGGGTGCCATTGACGGCTTTGATCCTGGTGGGGATTGGTGGGTCAGTGTATTGCGTTTATAAAAAGAAGAGAAGAAGAAGGTTGGACGATGAACAGATACTGGGGACGTTGAAGAGCTTGCCGGGAACGCCGAGAGAGTACTCATTCAAGGAATTGAAGAAGGCGACGAATAATTTCAGTGAGAAGAACAAGCTCGGAGAAGGAGGGTATGGGATGGTGTACAGAGGGATTTTGCAGAAAGAGAATAACTTGGAAGTGGCAGTGAAGAAATTCTGCAGAGATAAGATGAAATGCAAAGATGATTTCTTGGCTGAACTCACCATTATCAATCGTCTTCGTCATAAGCATCTTGTTCGGTTACTAGGTTGGTGCCACAAGAATGGAGTGTTAATTTTGGTATATGAGTTCATGCCGAATGGCAGCCTGGACAATCACCTTTTCTTTGAGGATGGAAAAATTACAAGACCTCTAAGTTGGAACCTACGGTACAAAATCATCTCAGGCGTAGCCTCAGCACTTAACTACCTCCATAATGAGTATGATCAAAAAGTAGTTCATAGAGATCTCAAAGCCAGCAATATCATGCTTGACTCTGACTTTAATGCTCGCCTTGGCGACTTTGGCCTTGCTAGAGCCATTGAGCATGAGAAAACCTCATACGCTGAGGTTGAAGGAATCCATGGCACAATGGGGTACATCGCGCCAGAGTGCTTCCACACAGGGAAGGCAACACGACAATCAGATGTGTTCAGTTTTGGAGCAGTTCTGCTAGAAGTAGTGTGTGGTGAGAGGCCCTGGACAAAGAAGGAAGGGTTTCAGTTACTGGTGGATTGGGTTTGGTATTTGTATGGTGAAGGTAGGATTCTTGAGGCTGTGGATAAAGGGCTTGGGAATGAGTATGAGATTGAAGAAGCAGAGAAAATATTGAAATTAGGGTTAGCATGTTCTCATCCTATTGCTGGTGAGAGGCCAAAGATGCAAACTATAATGCAAATTATAAGTGGGGCTGTCCCTGTGCCTTATGTGCCTCCAAGTAAGCCTGCTTTTATTTGGCCAGCTGTGGATTTTGGAAGCTTTATTAGTGATCTCACAACACCATCTTCTACTACTGCAAACACACCTGTTCATACAGATTCAGATCCTCTACATTCATCAAAGTGA	2121	0.4677	MLSLQCSSRHHHHQPPRRQKLDMNRRPCIPVSATVAAFICFLQLLFPAAKSQSQNMKTDRYVFGPFDVSYYTTFKVIPPASINFGALQVTPDTAGNVNLTDTYGRILFRKPFNLWEDTGKVASFNSSFLINVYRVNNATPGEGVAFFIASSLDIPRNSHGQYLGLTNSTTDGNPDNHIVAVELDTVKQDFDPDDNHIGLNINSVKSKTTVSLSQYGMEIAPKGAKYYVIWIDYNGSSKEINVFIKEQPDRNAPIVSKPEEPVLTSDLDLKNIVKQSSYFGFSASTGTTYQLNCVLRWNLTVEILSENKNKSRSLKMGLGIGVPLTALILVGIGGSVYCVYKKKRRRRLDDEQILGTLKSLPGTPREYSFKELKKATNNFSEKNKLGEGGYGMVYRGILQKENNLEVAVKKFCRDKMKCKDDFLAELTIINRLRHKHLVRLLGWCHKNGVLILVYEFMPNGSLDNHLFFEDGKITRPLSWNLRYKIISGVASALNYLHNEYDQKVVHRDLKASNIMLDSDFNARLGDFGLARAIEHEKTSYAEVEGIHGTMGYIAPECFHTGKATRQSDVFSFGAVLLEVVCGERPWTKKEGFQLLVDWVWYLYGEGRILEAVDKGLGNEYEIEEAEKILKLGLACSHPIAGERPKMQTIMQIISGAVPVPYVPPSKPAFIWPAVDFGSFISDLTTPSSTTANTPVHTDSDPLHSSK	706

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pral5993g00004	706	CDD	lectin_legume_LecRK_Arcelin_ConA	71	301	IPR001220	GO:0030246
	Pral5993g00004	706	MobiDBLite	consensus disorder prediction	687	706	-	-
	Pral5993g00004	706	Gene3D	Phosphorylase Kinase; domain 1	364	456	-	-
	Pral5993g00004	706	MobiDBLite	consensus disorder prediction	1	23	-	-
	Pral5993g00004	706	ProSitePatterns	Legume lectins beta-chain signature.	179	185	IPR019825	-
	Pral5993g00004	706	Pfam	Legume lectin domain	73	311	IPR001220	GO:0030246
	Pral5993g00004	706	Pfam	Protein tyrosine and serine/threonine kinase	382	651	IPR001245	GO:0004672\|GO:0006468
	Pral5993g00004	706	ProSiteProfiles	Protein kinase domain profile.	379	662	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5993g00004	706	SUPERFAMILY	Concanavalin A-like lectins/glucanases	60	303	IPR013320	-
	Pral5993g00004	706	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	504	516	IPR008271	GO:0004672\|GO:0006468
	Pral5993g00004	706	CDD	STKc_IRAK	385	653	-	-
	Pral5993g00004	706	SMART	serkin_6	379	653	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Pral5993g00004	706	SUPERFAMILY	Protein kinase-like (PK-like)	361	687	IPR011009	-
	Pral5993g00004	706	FunFam	probable L-type lectin-domain containing receptor kinase S.5	364	456	-	-
	Pral5993g00004	706	FunFam	probable L-type lectin-domain containing receptor kinase S.5	457	658	-	-
	Pral5993g00004	706	Gene3D	-	60	317	-	-
	Pral5993g00004	706	PANTHER	-	91	657	-	-
	Pral5993g00004	706	Gene3D	Transferase(Phosphotransferase) domain 1	457	658	-	-
	Pral5993g00004	706	ProSitePatterns	Protein kinases ATP-binding region signature.	385	410	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pral5993g00004	Pral-Chr5993	29729	34076	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pral5993g00004	91	669	Receptor kinase-like Gene Family	AT5G55830	38.636	7.10e-126	388

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Pral5993g00004		PK_Tyr_Ser-Thr	4.3e-49	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pral5993g00004	-		-	gmx:100780014	932.939