Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5988g00008 ATGGGTTCTGTTTGTTGTTGTATGAGTGCTGATGAATTTGAAGATTATGTAAATCGAAATAGTTCTGTATATAGAAATTGTGGGTGTCTCAATTGCTTCTTACAGAACTTTTTGAATGTGTATACAGCAATATTCCGCAGGGGGGAAGTGCATTCGCTTCCTTCATCTATACAGGGGGCAGCATCTATGACTTCTACAGCATCACTTGATAATTCGATGTCTGACATGTACCATTCTCCTCCAAGGCCCTTGCCTTATGACGTAGACCCCAGGCATTTCCGCTCACGTGATTTATTTGCTTCAAGACATGACAAAGGTTCAAGTCATTTGAATGAAGAGTCAGAACCTCTAACAGGTGATATAGATGGGGATCAAGAATCTTTAAATTCCGGAGGCAAATGTAATGAATCTTCCTGTGAAAATGCATCAAAGGAATACAAATCTAAGTCCTCAGTAAGGCTCTCATCAGCAAAATATACAACTGGAGCTGGTCTTGCTTATGCATCATCAGAAGAAGAGGATGTTTGCCCAACTTGTCTTGAAGAATACACTGAAGAGAACCCAAGGATATTGACAAAGTGCAATCATCATTTTCATCTTAGTTGCATTTACGAATGGATGGAGAGAAGTGAGAGCTGTCCAGTTTGTGGGAAGGTGATGGTATTTGATGAAACAACTTAA 681 0.3979 MGSVCCCMSADEFEDYVNRNSSVYRNCGCLNCFLQNFLNVYTAIFRRGEVHSLPSSIQGAASMTSTASLDNSMSDMYHSPPRPLPYDVDPRHFRSRDLFASRHDKGSSHLNEESEPLTGDIDGDQESLNSGGKCNESSCENASKEYKSKSSVRLSSAKYTTGAGLAYASSEEEDVCPTCLEEYTEENPRILTKCNHHFHLSCIYEWMERSESCPVCGKVMVFDETT 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5988g00008 226 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 60 224 - -
Pral5988g00008 226 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 226 IPR013083 -
Pral5988g00008 226 ProSiteProfiles Zinc finger RING-type profile. 176 216 IPR001841 -
Pral5988g00008 226 Pfam RING-H2 zinc finger domain 170 216 IPR024766 GO:0008270
Pral5988g00008 226 CDD RING-H2_AIRP1-like 172 220 - -
Pral5988g00008 226 MobiDBLite consensus disorder prediction 102 139 - -
Pral5988g00008 226 SMART ring_2 176 216 IPR001841 -
Pral5988g00008 226 SUPERFAMILY RING/U-box 171 223 - -
Pral5988g00008 226 FunFam E3 ubiquitin-protein ligase At3g02290-like 153 223 - -
Pral5988g00008 226 MobiDBLite consensus disorder prediction 123 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5988g00008 Pral-Chr5988 24678 29369 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5988g00008 1 224 C3H Transcription Factor Family AT5G38895 56.444 9.82e-93 273
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5988g00008 - - gmx:100788192 385.185