Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5984g00029 ATGACAGCAACCCAGTTTTCCGAGAGATCAAGCATGGAGATGGAATCCTGTGTTCCGCCGGGGTTTAGATTTCGTCCGACAGAGGAAGAACTTGTAGGGTACTACCTCAAAAGGAAGATAAACTCGTTGAAAATGGATCTAGATGTTATTGCAGAGATCGATCTGTACAAAATTGAACCCTGGGACATTCAAGATAAATGCAAGATGGGGTACGAGGAAGAGAAGGAGTGGTACTTTTTCAGTCACAAGGACAAGAAATACCCAACAGGGACGAGAACAAACAGAGCGACAGCGGCAGGATTCTGGAAAGCAACGGGGAGGGACAAGGCAGTGATGTCCAAGAAGAACAGAATCATAGGCATGAGGAAGACCCTCGTCTTCTACAAGGGACGTGCCCCTTATGGCTCCAAGACCGATTGGATTATGCATGAATTTCGCCTCCAAACTTCCCAACATGCCCCTCCTCAGGAAGAAGGATGGGTGGTGTGCCGAGCATTCACGAAACCTAGTCCTACTCAGCCCAGACAAAGTTTCGAATGTTGGGGCAGCCAAGCACACTTTTCAGACCAAATAAGCAGCATTACAAGCCCTCCATCAATATCATTTACAAGCGAAACCCTAAATCAGGTGCTTTATCCAACTAATGAAGGGACAAGTTTTATTCATCCCTTCACTTCGAATCATCATCACCAACAGTTTCTGTCAAACGATACCGTTTTGGACGACCACAACAGCAGCCAGCTTGTTGAGCTCATTCCACAGCTAGATAGCCCCACAGCTTCTTTGTCAGCTAGAGCAGTGAAACAAAATGGCTTCACAAATGAAGACAGTTACGGTCAAGAAAGGACCAGTAATAATAACAACGTTAACGATGGCCAAGGCATTGATTGGAAGAGCTTGGACAGCTTGTTCACTTCTCAGTTCGCAGACGATACCGCCACTGCTGCTTATTTTTCTCAACCAAACTTGCCCTTGGTACCACATAGTAGTCATGACCTACAAGTATTACAGCCTCAAAACCATCAAGCTAGCCATGTCCTGGGATGCTTTCCTGATTCATAA 1062 0.4586 MTATQFSERSSMEMESCVPPGFRFRPTEEELVGYYLKRKINSLKMDLDVIAEIDLYKIEPWDIQDKCKMGYEEEKEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKAVMSKKNRIIGMRKTLVFYKGRAPYGSKTDWIMHEFRLQTSQHAPPQEEGWVVCRAFTKPSPTQPRQSFECWGSQAHFSDQISSITSPPSISFTSETLNQVLYPTNEGTSFIHPFTSNHHHQQFLSNDTVLDDHNSSQLVELIPQLDSPTASLSARAVKQNGFTNEDSYGQERTSNNNNVNDGQGIDWKSLDSLFTSQFADDTATAAYFSQPNLPLVPHSSHDLQVLQPQNHQASHVLGCFPDS 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5984g00029 353 Gene3D NAC domain 27 171 IPR036093 GO:0003677|GO:0006355
Pral5984g00029 353 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 268 - -
Pral5984g00029 353 MobiDBLite consensus disorder prediction 272 292 - -
Pral5984g00029 353 FunFam Nac domain-containing protein 86 27 171 - -
Pral5984g00029 353 Pfam No apical meristem (NAM) protein 19 147 IPR003441 GO:0003677|GO:0006355
Pral5984g00029 353 ProSiteProfiles NAC domain profile. 18 168 IPR003441 GO:0003677|GO:0006355
Pral5984g00029 353 SUPERFAMILY NAC domain 11 168 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5984g00029 Pral-Chr5984 150101 153648 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5984g00029 14 353 NAC Transcription Factor Family AT1G71930 49.577 6.01e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Pral5984g00029 NAM 2.3e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5984g00029 - - gmx:100811057 431.024