Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5984g00002 ATGGCAGATTTTCAACCGCTACAACAGAAGCCTGAATCCACTGATGCCCATACTGACTTTGAACGTGGGCTGGAGGACTTTATGCGGGGCCACTTGGATGATTGCATGTCCTTTGCTTCATGTAGTTCTGCCCGGACTCAGGATGGGGAGGATGATGAGGGTGATCAGCTAGCTAGGAGGAGGAGAAGATCTGATCTTGAGGGGGATGATTTAGCAGAGTCATCAGCTGCACGCCGGCGCCACTCACGGATTTTGAGCAGATGGGCTGCCCACCAGGCCCAAGAGATGATAACTACAATTGAGAGAAGGAATCGGGAGTCTGAGTTGATGGCACTTGCTGGGTTGCACACAGTCTCAATGTTGGACTCCTCTTTTTTGAGGGGATCACAGACTCCAACTTCTGGCCAGGAGGGGGCTGTAGAGAGGCCCAACACTCAGGCTTCTGCAATTCTTCAGATGTGGCGTGAATTGGAGGATGAACACTTGCTTAGTCGGGCGCATGAAAGGATGAGGGAAAGGCTGCGTCAACAAAGGATTGCTGATTCTAATGCCAACGGATCAAGTACCATTTCAGATAGTCGGGGAAGTGAGAATCAGGGGAGTTTGGTGGATGCAAGTGAAAGTGAAAATGATTATGGTACTTGGTCGCATGATCAGATTCAATCAAGGCATGAAAATGGCGACCATAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGTGAGGTTGAGAGGGAGAGAGTTAGGCAGATTGTGCGGGGATGGATGGAAAGTGGCATCAGTGATCATTCATCTGATGCAAGTCAAAGAAACAATAATCGCAGAGCAGAGTGGCTTGGTGAAACAGAGCGTGAAAGGGTGAGAATTGTCAGGGAGTGGGTGCAAATGACAAGTCAACAGCGAGGTTCTCGTGGGAGCCGGAGGGATAGTCAACCCACTGAAAGTGGCTCTCGAGTTGAGAGAGTCCGTGATGGATTGTTAACTGATCATGATGATGGCCAGCCAGAGCATGTACGCAGAGATTTGTTGAGGTTGCGTGGACGACAAGCTTTGGTTGATTTGCTTGTGAGGGTTGAAAGGGAAAGACAAAGAGAGCTGCAGGGTTTGTTGGAGCACCGTGCTGTTTCTGATTTTGCTCATCGTAACCGCATTCAGTCATTACTCAGAGGTAGATTCCTCCGAAATGAAAGAACTATAGAAGACGAGAGACCTCCTTCTGTGGCAGCAAATGAATTAGTTCAGTTAAGACAACGTCACACAGTCTCTGGTTTAAGAGAAGGGTTTCGCTCAAGATTAGAAAATATTGTTCGTGGTCAAGCTAGCAGCAATTCTGATGCCATGTCTAATAGTAATAGCAGCGAAACCAGAAGTGATGTGAACCAAGAAAACAATTCAACAGATGCCCAGCACGAAATTTATGAACAAGGGCAGGTTAGGAGCCTGGAAACTGATGTGCAGCAGTTGGCTGATCAAACAGGAGCTTTCGAAAGTAGCACTAGTGAGAGTATGAGTTGGCAAGAAACTAGTAATCAAGGGGGAAACTGGCAGGAACAAGTTACTGAAGATGGTCGTAGAAATTGGCCACGGAGAGCTTATGGTCCGTTGAATCAATTAAGAGATGGAAGGGCTGCAAGTGATTGGCGGCATGATTCTCCAATAAATGTTGAAGGGGAAGATGCTCATCCACGAGAAGCTCGGGGAATTTGGCATCAGGATAATTCAAGGGAAGCTGCTGGTAATTGGTCTGAAGAGCCCTCTGGTCCTCCAAGGAATCGACGTGGTGTTCCTTTTAGGAGATTCAATAGGTTTCATCCACCAGAGGATGATAATGTATATAGCATGGAGCTTAGAGAACTTTTGAGCAGGAGAAGTGTTTCCAATCTTCTTCGCAGTGGTTTCCGTGAAAGTCTGGACCAATTAATCCAGTCATACGTGGAAAGGCAAAACCGTGCACCTATTGACTGGGATTTGCACAGAAACTTGCCAACACCAGCTCCTGCCTCACCTGACGGGGATCCTGAACAACAGGCAGATGAACGAAATGGGGCTCAACATGATGCTATTAATAGGCCTTCTCTAGTGTTGCCATCTCCGCCAGTTCCTCCACCTCAACCGCTTTGGCACCAGGACTTGCATCAGACTGGATGGTCTCGCCATAGCATGCATCGGTCTGAAATTGAATGGGAGATAATCAATGATTTGAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCTTGCATGGATATGCAGCTGGAGTTACAACGCTCTGTCAGACAGGAAGTGTCTGCAGCGCTGAATCGTTCAGCGGGTGAAAGTGGAATGGGCGCCGAGACATCTGAAGATGGGTCTAAATGGGGCCATGTAAAAAAAGGAACTTGTTGTGTTTGTTGTGATAGCCATATTGATTCGCTTTTGTACAGATGTGGTCACATGTGCACTTGTTCAAAATGTGCCAATGAATTAGTTCGTGGTGGAGGAAAGTGCCCTTTATGCCGAGCACCTATTGTGGAGGTGATCCGAGCATATTCCATTGTGTAA 2565 0.4749 MADFQPLQQKPESTDAHTDFERGLEDFMRGHLDDCMSFASCSSARTQDGEDDEGDQLARRRRRSDLEGDDLAESSAARRRHSRILSRWAAHQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQTPTSGQEGAVERPNTQASAILQMWRELEDEHLLSRAHERMRERLRQQRIADSNANGSSTISDSRGSENQGSLVDASESENDYGTWSHDQIQSRHENGDHNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSDASQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQPTESGSRVERVRDGLLTDHDDGQPEHVRRDLLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTIEDERPPSVAANELVQLRQRHTVSGLREGFRSRLENIVRGQASSNSDAMSNSNSSETRSDVNQENNSTDAQHEIYEQGQVRSLETDVQQLADQTGAFESSTSESMSWQETSNQGGNWQEQVTEDGRRNWPRRAYGPLNQLRDGRAASDWRHDSPINVEGEDAHPREARGIWHQDNSREAAGNWSEEPSGPPRNRRGVPFRRFNRFHPPEDDNVYSMELRELLSRRSVSNLLRSGFRESLDQLIQSYVERQNRAPIDWDLHRNLPTPAPASPDGDPEQQADERNGAQHDAINRPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIINDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGESGMGAETSEDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIV 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5984g00002 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
Pral5984g00002 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 852 IPR013083 -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 655 710 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 1 22 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 256 276 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 261 275 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 176 244 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 41 78 - -
Pral5984g00002 854 SUPERFAMILY RING/U-box 801 847 - -
Pral5984g00002 854 Coils Coil 731 751 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 435 465 - -
Pral5984g00002 854 CDD mRING-HC-C3HC5_NEU1 799 851 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 307 334 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 294 334 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 179 220 - -
Pral5984g00002 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 853 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 491 521 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 46 78 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 542 571 - -
Pral5984g00002 854 MobiDBLite consensus disorder prediction 491 597 - -
Pral5984g00002 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5984g00002 Pral-Chr5984 7600 13482 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5984g00002 779 848 C3H Transcription Factor Family AT3G06140 37.143 5.81e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5984g00002 - - gmx:100805607 1344.33