Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5983g00002 ATGTCTACCTACGGCAAGCTCGACGAATCCGAGCAAGAAAGGCTCGTAGCTCGCCAGAAGACCCGGAGGCGAATCGCCGTCATGAGCTTGTCAGCCGTTGTCCTGGTCGGCGTTGTTGTGGCGGCTGTCTTAGGAACAAGTCTTGCTCACAACAACGACAAGGACGACAAAAACAACAGTAGTAGCAATAATGTTGATATTTCTGCTTCAGTGAAAGCCGTGTGTGATGTGACATTGTACAAGGATGCTTGTTATGCCAGCCTTGGACGTGTGGTTCAACCAGGACAAGTGATGAAGCCTGAGGATTTGTTCAAGCTGTCTCTTCAAGTTGCATTGGATGAAGTTTCTAATGCTGCTGATAAGTATTTTTCTGGTGAAAAGGGAGCTTTTAAGGATTTGATTGGTGATGACAATAGGACCATGGAAGCTTTCAGAAATTGCAAGGAGCTGTTGGGTCTTGCTATTGATCATCTGAATGTCTCCTTGTCTTCTGGGCAGAATTCTTCTGTTCTTGACCTTTTTGAAGATCTTCAAACATGGTTAAGTGCTACAGGAACATACCAACAAACATGCATAGATGGCTTAGAGGAAGCAAAAGGATCAATAAAGAACAGAATTAGTAGCTACCTAAAGAACTCTACAGAGTTTACTAGTAACAGTCTGGCCATTATCACTTGGATTCAGCAGGCTACAAGCACACTAAACTTGAGACGACGACGTTTATTGACCCTACCAAATAACAACGAAGCTCCAGCATGGCTTCATCAGAAAGACAGAAAGCTGCTTGCATCAGACAAGGACTTGAAGAAGAGAGCAGACATTGTTGTGGCCAAAGACGGGTCTGGAAAATACAGAACAATCTCTGAAGCACTCAAACACGTCCCAGAAGAGAGCAAGAAGAGAACTGTGATCTATGTGAAGAAAGGATTTTACTATGAGAATGTTAGAGTTGAGAAGAAGAAATGGAATGTGATGATGATTGGAGATGGAATGACCAGAACAATTGTGTCTGGTAGTCTCAACTTTGTTGATGGCACACCCACTTTCTCATCTGCAACATTTGCTGTTTTTGGGAAGAACTTCATGGCGAGGGACATCGGATTTCGCAACACGGCGGGGCCACAGAAGCACCAGGCTGTGGCACTAATGACAAGTGCTGATCAGGCTGTGTACTACAGATGCCTGTTTGATGCATTTCAGGACACTCTCTATGCTCATTCACATCGCCAGTTCTATAGAGAATGCAACATCTTTGGCACTGTTGATTTCATCTTTGGCAACTCTGCAGTTGTCATTCAAAATTCCAACATCTTCCCAAAGGTGCCTATGTTGGGGCAGAAGAACACAATCACAGCACAAGGGAAGGTAGATCCTAATATGAACACAGGGATTTCAATTCAGAATTGCAGAATCTCACCCTTTGGGAACTTGAGTTCTGTGCAAACGTATCTGGGAAGGCCATGGAAGAACTACTCAACCACTGTGTTCATGCAATCTTCAATGGGAGATTTAATTGATCCTAGTGGCTGGTTGCCATGGGTGGGAGACTCAGCACCAGACACTATTTTCTATGCTGAGTTTCAGAACTTTGGACCCGGTGCTTCAACAAAAGGTAGAGTCAAATGGAAGGGTTTAAGAACAATTTCTGCTAAACAAGCAAATAGATTCACAGTTAAGGCCTTTCTTCAGGGAGACCGATGGATTCCGGCCACAAGTACCCCCTACAAGTCTTCTCTGTGA 1740 0.442 MSTYGKLDESEQERLVARQKTRRRIAVMSLSAVVLVGVVVAAVLGTSLAHNNDKDDKNNSSSNNVDISASVKAVCDVTLYKDACYASLGRVVQPGQVMKPEDLFKLSLQVALDEVSNAADKYFSGEKGAFKDLIGDDNRTMEAFRNCKELLGLAIDHLNVSLSSGQNSSVLDLFEDLQTWLSATGTYQQTCIDGLEEAKGSIKNRISSYLKNSTEFTSNSLAIITWIQQATSTLNLRRRRLLTLPNNNEAPAWLHQKDRKLLASDKDLKKRADIVVAKDGSGKYRTISEALKHVPEESKKRTVIYVKKGFYYENVRVEKKKWNVMMIGDGMTRTIVSGSLNFVDGTPTFSSATFAVFGKNFMARDIGFRNTAGPQKHQAVALMTSADQAVYYRCLFDAFQDTLYAHSHRQFYRECNIFGTVDFIFGNSAVVIQNSNIFPKVPMLGQKNTITAQGKVDPNMNTGISIQNCRISPFGNLSSVQTYLGRPWKNYSTTVFMQSSMGDLIDPSGWLPWVGDSAPDTIFYAEFQNFGPGASTKGRVKWKGLRTISAKQANRFTVKAFLQGDRWIPATSTPYKSSL 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5983g00002 579 SUPERFAMILY Pectin lyase-like 271 575 IPR011050 -
Pral5983g00002 579 CDD PMEI-like_3 73 227 - -
Pral5983g00002 579 Gene3D - 268 579 IPR012334 -
Pral5983g00002 579 NCBIfam pectinesterase inhibitor domain 68 227 IPR006501 GO:0004857
Pral5983g00002 579 FunFam Pectinesterase 267 579 - -
Pral5983g00002 579 Pfam Pectinesterase 273 565 IPR000070 GO:0030599|GO:0042545
Pral5983g00002 579 Pfam Plant invertase/pectin methylesterase inhibitor 70 223 IPR006501 GO:0004857
Pral5983g00002 579 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 70 227 IPR035513 -
Pral5983g00002 579 SMART PMEI_2 66 223 IPR006501 GO:0004857
Pral5983g00002 579 PANTHER PECTINESTERASE 36 571 - -
Pral5983g00002 579 ProSitePatterns Pectinesterase signature 2. 417 426 IPR033131 -
Pral5983g00002 579 Gene3D Invertase/pectin methylesterase inhibitor family protein 68 228 IPR035513 -
Pral5983g00002 579 FunFam Pectinesterase 67 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5983g00002 Pral-Chr5983 5101 7898 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5983g00002 2 579 Carbohydrate Esterase AT3G10710 57.633 0.0 667
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5983g00002 - - gmx:100808802 798.119