Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pral5980g00004 | ATGAAAAAGACGGAGCTCTGTCAATTTAGTGGGGGCAAGATCTACCCTGGGAAAGGCATCAGATTCGTTCGCTCTGATTCTCAGGTCTTTTTGTTTGCCAGCTCAAAATGCGAAAGGTACTTCCACAACAGTTTGAAGCCTTCAAAACTCACCTGGACTGCCATGTACAGGAAGCAACACAAGAAGGACCTTGCCCAAGAGGCTGTGAAGAGGCGTCGCACCACCAAGAAGCCTTACTCTAGATCGTTTGTCGGTGCTAATTTGGAAGTTACCCAGAAGAGAATTGTGCTTTGA | 294 | 0.4694 | MKKTELCQFSGGKIYPGKGIRFVRSDSQVFLFASSKCERYFHNSLKPSKLTWTAMYRKQHKKDLAQEAVKRRRTTKKPYSRSFVGANLEVTQKRIVL | 97 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pral5980g00004 | 97 | Pfam | Ribosomal protein L24e | 3 | 66 | IPR000988 | - | |
| Pral5980g00004 | 97 | CDD | Ribosomal_L24e_L24 | 3 | 55 | IPR000988 | - | |
| Pral5980g00004 | 97 | PANTHER | 60S RIBOSOMAL PROTEIN L24 | 3 | 94 | IPR000988 | - | |
| Pral5980g00004 | 97 | FunFam | 60S ribosomal protein L24 | 1 | 63 | - | - | |
| Pral5980g00004 | 97 | ProSitePatterns | Ribosomal protein L24e signature. | 9 | 26 | IPR023442 | - | |
| Pral5980g00004 | 97 | SMART | 4TRASH | 7 | 45 | IPR011017 | - | |
| Pral5980g00004 | 97 | Gene3D | Ribosomal protein L24e | 2 | 63 | IPR038630 | - | |
| Pral5980g00004 | 97 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 5 | 57 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pral5980g00004 | Pral-Chr5980 | 11695 | 12728 | Tandem |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pral5980g00004 | 3 | 94 | Cytoplasmic Ribosomal Protein Gene Family | AT3G53020 | 82.796 | 9.88e-54 | 163 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pral5980g00004 | K02896 | - | qsa:O6P43_009497 | 169.088 |