Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5980g00003 ATGGTTCTCAAGACGGAGCTCTGTCAATTTAGTGGGGGCAAGATCTACCCTGGGAAAGGCATCAGATTCGTTCGCTCTGATTCTCAGGTCTTTTTGTTTGCCAGCTCAAAATGCGAAAGGTACTTCCACAACAGTTTGAAGCCTTCAAAACTCACCTGGACTGCCATGTACAGGAAGCAACACAAGAAGGACCTTGCCCAAGAGGCTGTGAAGAGGCGTCGCACCACCAAGAAGCCTTACTCTAGATCGTTTGTCGGTGCTAATTTGGAAGTTACCCAGAAGAGAATTGTGCTTTGA 297 0.4747 MVLKTELCQFSGGKIYPGKGIRFVRSDSQVFLFASSKCERYFHNSLKPSKLTWTAMYRKQHKKDLAQEAVKRRRTTKKPYSRSFVGANLEVTQKRIVL 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5980g00003 98 CDD Ribosomal_L24e_L24 3 56 IPR000988 -
Pral5980g00003 98 Gene3D Ribosomal protein L24e 3 64 IPR038630 -
Pral5980g00003 98 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 58 - -
Pral5980g00003 98 Pfam Ribosomal protein L24e 4 67 IPR000988 -
Pral5980g00003 98 FunFam 60S ribosomal protein L24 3 64 - -
Pral5980g00003 98 SMART 4TRASH 8 46 IPR011017 -
Pral5980g00003 98 ProSitePatterns Ribosomal protein L24e signature. 10 27 IPR023442 -
Pral5980g00003 98 PANTHER 60S RIBOSOMAL PROTEIN L24 4 95 IPR000988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5980g00003 Pral-Chr5980 11120 12728 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5980g00003 1 95 Cytoplasmic Ribosomal Protein Gene Family AT3G53020 83.333 3.66e-56 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5980g00003 K02896 - rcu:8274878 174.096