Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral596g00006 ATGGGAGCCGGAAAGCGGAACACAGAGATCAAGAAAATTGAGAACAAATCAGCGAGGTACGTTTGCTTCTCCAAGCGCCGCGAGGGACTGTTCAAGAAGGCTCAGCAATACCACAAAATCTCAGGGTCCCTCATTGCGGTACTGGTCTTTTCTCCTACTGGAAGATCCTACGTCCATGGCTCCCCTTCCTTCGACCCCATCATTGACCAATTCCTTCACAGCTCCACCGCGGCGTCAATGACGACTATGACAGCCGCCGGCACCAGCAGCACCGGCGGGAGCTGTATGACGGAGCCCTCTGTTTCCGACTCTGCCTCTACTACTAACAACGTGGGTTTGAGAGAACAGTTGGAGGCGATCAAATTGGAAGGGTGTGACAGTTTGGAGGAGCTGGTGGAGATGAAGAGGAAACTGGAAGAGGTTAGAGAGACGGTGCTATGCAGTTTCGCGGACTCGCTCATCTCTTGA 468 0.5321 MGAGKRNTEIKKIENKSARYVCFSKRREGLFKKAQQYHKISGSLIAVLVFSPTGRSYVHGSPSFDPIIDQFLHSSTAASMTTMTAAGTSSTGGSCMTEPSVSDSASTTNNVGLREQLEAIKLEGCDSLEELVEMKRKLEEVRETVLCSFADSLIS 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral596g00006 155 SMART madsneu2 3 62 IPR002100 GO:0003677|GO:0046983
Pral596g00006 155 ProSiteProfiles MADS-box domain profile. 3 63 IPR002100 GO:0003677|GO:0046983
Pral596g00006 155 PRINTS MADS domain signature 25 40 IPR002100 GO:0003677|GO:0046983
Pral596g00006 155 PRINTS MADS domain signature 40 61 IPR002100 GO:0003677|GO:0046983
Pral596g00006 155 PRINTS MADS domain signature 5 25 IPR002100 GO:0003677|GO:0046983
Pral596g00006 155 Gene3D - 15 85 IPR036879 GO:0003677|GO:0046983
Pral596g00006 155 PANTHER MADS BOX PROTEIN 7 145 - -
Pral596g00006 155 MobiDBLite consensus disorder prediction 85 108 - -
Pral596g00006 155 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Pral596g00006 155 SUPERFAMILY SRF-like 4 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral596g00006 Pral-Chr596 6934 7862 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral596g00006 4 83 Type I MADS-box Gene Family AT1G47760 38.750 7.79e-15 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Pral596g00006 SRF-TF 4.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral596g00006 - K12412 cit:127901294 110.923