Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5966g00018 ATGAAGGCTTTACCGAATGGCTACTTGCCTAATTCTGGCGAAGGGGAAAGAAAAACAATCAACTCAGAGTTATGGCATGCATGTGCTGGACCCTTGGTTTCCTTACCTCCTGTTGGAAGTCTCGTCGTTTATTTCCCTCAAGGACACAGTGAGCAAGTCGCAGCATCCATGCAAAAGGAGGCTGATTTCATACCCAGTTATCCTAACCTTCCGTCCAAGTTAATTTGCATGCTTCACAATGTTGCATTACATGCTGATCCAGAAACTGATGAGGTCTATGCACAAATGACCCTTCAACCTGTAAACAAATATGACAAGGAAGCAATACTTGCATCAGACATGGGTCTGAAGCAAAGCCGACAGCCTGCTGAATTCTTCTGCAAAACTCTTACAGCTAGTGACACAAGTACGCATGGTGGATTTTCTGTACCTCGTAGAGCAGCAGAGAAAATATTTCCACCTCTGGATTTTTCAATGCAACCTCCTGCTCAGGAGATTGTTGCCAAGGATTTGCATGACAATACATGGACATTCAGACATATTTATCGCGGACAACCAAAGAGGCATCTGCTGACTACTGGTTGGAGTGTCTTTGTCAGCACAAAAAGACTATTCGCTGGAGATTCTGTTCTTTTTATTAGGGATGCAAAACAGCAGCTTCTTGTGGGTACAAGGCATGCCAATAGACAACAACCTGCTCTCTCTTCATCGGTCATATCCAGTGACAGCATGCATATAGGCATTCTTGCTGCTGCAGCTCATGCTGCTGCAAACAACAGCCCATTTACCATATTTTACAATCCAAGAGCTAGCCCTGCAGAATTTGTAATTCCATTGGCCAAGTATAATAAAGCCATGTACACCCAAGTTTCCCTTGGAATGAGGTTTAGAATGATGTTTGAGACTGAGGAGTCAGGAGTTCGTCGATACATGGGTACAATTACAGGGATCAGTGACTTGGATCCTGTGCGATGGAAAAATTCACAGTGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGTGAGCGCCCAAGCAGAGTATCAATTTGGGACATTGAACCAGTCGTTACTCCTTTCTACATTTGCCCCCCTCCTTTCTTCAGGCCCAGGTTCTCCAAGCAACCAGGAATGCCAGATGATGATTTCGACATGGAAAATGCATTCAAGAGAGCTATGCCCTGGCTCGGCGATGACTTTGGCATGAAAGATGCCTCAAGTTCAATGTTTCCTGGTTTGAGTTTAGTTCAGTGGATGAGCATGCAGCAGAACAACCAGTTATCTGCTACACAATCAGGAATGTTCCCATCTATGCTTTCATCCAATTCCCTTCAGAATAACCTCAGCACTGATGATCCATCCAAATTATTGAGCTTTCAAAACCCTGTCCTCTCTGCATCAAATCTTCAATTTAACAGACCAAATTTACCAAACCAAGTCAACCAATTGCAACAAGCCCCAACATCATGGCCTCAGCAGCAGCAGCAGCAGCAGCAGATGCAATCCTTGTTGCAAGCACCTGTAAACCAGCTCCAGCAGCAGAGGCAGCAGCCGCAGCCGCAGCTGCAGCCGCAGCCACACCAGCTTCCTGAGCCACAAAATATGACGCCGCAGCAGCAGCAGCAGCCACCACCCCAGTTGCAGCAACAGCGAGTACAACAACCACAGCAGCAGCAGCAATCATGTCAACAGGCCATTATAAACAATGGGGTGATTGGTTCTAGCCAAATTCCAAATCCGAGTGTGCAACAATCAATAGCCTACTCTCAGCTTCAGCAGCAGCAGTTACTGTCAGCCAGCATGCCTCTTCAGCAAAATATTCAATCAGCTAGCAAAAATACATTCCCACTCACAACCTTATCACAAGATTCACAGTTTCAGCCACAGATAGACCCACAAGCTACTCTCTTGCAGAGGCAGCAGCAGCAGCAGCAACAATCCCAATTGCAGATATTCCAACAGAGCTTGTCACAGAGGGCCCCACAACAACCCCAAGTGGCTCAGTTGCCACCACAAAACCTGTCAGAACAACAGTTGCACATACAGTTGCTACAAAAATTGCAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAATTTCTTTCTCCAGCTAGTTCACTTTTGCAGCCTCAGCTGCTACAGCAACAGCAAGCACATGTACCAAACCAACAACTACCACAGCCGACTCTGTCTCAGCATCAGCCTCAGCCTCAGCAGCTCAGCAACAATGCATTATCTGCAGAGAAGCTTCTGGTCAGCAACGGCTTTTCTTCTTCACCTCTGATACAACCACAACAGGTTCCTTTGAATCAAGCCCAGAATACACCAAAACCACTTACAACTACCAAAGCTCCTTCTAGTCTTACAGATGGAGATGCCCCGTCATGTTCAACCTCACCATCAACTAATAACTGCCAGGTATCTCCACCAAACCTTCTGAAGAGAAATCAACAAATGCCAGCAACATTAGGGGGGAGCTTGGTGGTTGAGCCCACAAATAATCTGGTACAGGAGCTACAGGGAAAGTCTGACATCCAGGTCAAACATGAGTTGCCAGGTGTTAAAGGGCCTGATCAGCTAAAGTATAAAGGGGCAATAACTGATCAATTGGAAGCCTCTTCTTCTGGAACATCTTATTGCCTTGATCCTTGCAGTGTGCAGCCAAACTTTACCCTTCCCAATTTCTGCATGGATGGGGATGTCCAATCGCATCCTCGGAACAATGTTCCATTTGCCTCTAATCTTGATGGATTAACGCCTGATACTTTGCTCTCTAGAGGGTATGACTCACAAAAAGATCTTCAAAATTTGCTCTCTAACTATGGGGGTGCTCCGAGAGATATAGAAACTGAGCTGTCGACTGCTGCTATCAGCTCTCAGTCATTTGGTGTGCCCAGCATGCCCTTTAAGCCTGGCTGCTCAAGTGATGTTGCCATTAATGAAGCTGGGGTTTTGAATAATAGCTTGTGGGCTAACCAGACTCAGCGAATGCGAACATATACTAAGGTTCAAAAACGTGGCTCCGTTGGAAGGTGCATTGATGTCACTCGTTACAAGGGATATGATGAACTCAGACATGACTTGGCTCGTATGTTTGGGATTGAGGGGCAATTGGAAGATCCTCAAAGGACTGACTGGAAACTAGTATATGTAGATAATGAAAATGACATTCTTCTTGTTGGAGACGACCCTTGGGAAGAATTTGTGAGCTGTGTTCAGAGCATAAAGATACTGTCATCTGCTGAAGTACAGCAAATGAGCTTAGACGGGGATTTAGGTAACGTTCCAATATCCAACCAAGCTTGTAGTGGAACAGACAGTGGTAATGCATGGAGGGGACCATATGATGATAACTCGGCTGCCTCATTTAATCGATAA 3381 0.459 MKALPNGYLPNSGEGERKTINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMQKEADFIPSYPNLPSKLICMLHNVALHADPETDEVYAQMTLQPVNKYDKEAILASDMGLKQSRQPAEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDNTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDAKQQLLVGTRHANRQQPALSSSVISSDSMHIGILAAAAHAAANNSPFTIFYNPRASPAEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPRFSKQPGMPDDDFDMENAFKRAMPWLGDDFGMKDASSSMFPGLSLVQWMSMQQNNQLSATQSGMFPSMLSSNSLQNNLSTDDPSKLLSFQNPVLSASNLQFNRPNLPNQVNQLQQAPTSWPQQQQQQQQMQSLLQAPVNQLQQQRQQPQPQLQPQPHQLPEPQNMTPQQQQQPPPQLQQQRVQQPQQQQQSCQQAIINNGVIGSSQIPNPSVQQSIAYSQLQQQQLLSASMPLQQNIQSASKNTFPLTTLSQDSQFQPQIDPQATLLQRQQQQQQQSQLQIFQQSLSQRAPQQPQVAQLPPQNLSEQQLHIQLLQKLQQQQQQQQQQQQFLSPASSLLQPQLLQQQQAHVPNQQLPQPTLSQHQPQPQQLSNNALSAEKLLVSNGFSSSPLIQPQQVPLNQAQNTPKPLTTTKAPSSLTDGDAPSCSTSPSTNNCQVSPPNLLKRNQQMPATLGGSLVVEPTNNLVQELQGKSDIQVKHELPGVKGPDQLKYKGAITDQLEASSSGTSYCLDPCSVQPNFTLPNFCMDGDVQSHPRNNVPFASNLDGLTPDTLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTAAISSQSFGVPSMPFKPGCSSDVAINEAGVLNNSLWANQTQRMRTYTKVQKRGSVGRCIDVTRYKGYDELRHDLARMFGIEGQLEDPQRTDWKLVYVDNENDILLVGDDPWEEFVSCVQSIKILSSAEVQQMSLDGDLGNVPISNQACSGTDSGNAWRGPYDDNSAASFNR 1126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5966g00018 1126 SMART B3_2 126 228 IPR003340 GO:0003677
Pral5966g00018 1126 FunFam Auxin response factor 994 1088 - -
Pral5966g00018 1126 Pfam B3 DNA binding domain 126 226 IPR003340 GO:0003677
Pral5966g00018 1126 FunFam Auxin response factor 289 361 - -
Pral5966g00018 1126 Gene3D - 994 1088 - -
Pral5966g00018 1126 MobiDBLite consensus disorder prediction 1107 1126 - -
Pral5966g00018 1126 SUPERFAMILY CAD & PB1 domains 1012 1077 - -
Pral5966g00018 1126 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 661 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pral5966g00018 1126 MobiDBLite consensus disorder prediction 482 561 - -
Pral5966g00018 1126 ProSiteProfiles PB1 domain profile. 999 1092 IPR000270 GO:0005515
Pral5966g00018 1126 Pfam Auxin response factor 252 334 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pral5966g00018 1126 SUPERFAMILY DNA-binding pseudobarrel domain 116 255 IPR015300 -
Pral5966g00018 1126 Gene3D - 124 227 IPR015300 -
Pral5966g00018 1126 FunFam Auxin response factor 124 228 - -
Pral5966g00018 1126 MobiDBLite consensus disorder prediction 533 561 - -
Pral5966g00018 1126 MobiDBLite consensus disorder prediction 482 523 - -
Pral5966g00018 1126 CDD B3_DNA 125 215 IPR003340 GO:0003677
Pral5966g00018 1126 MobiDBLite consensus disorder prediction 770 813 - -
Pral5966g00018 1126 ProSiteProfiles B3 DNA-binding domain profile. 126 228 IPR003340 GO:0003677
Pral5966g00018 1126 Pfam AUX/IAA family 994 1085 IPR033389 -
Pral5966g00018 1126 Gene3D - 289 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5966g00018 Pral-Chr5966 90894 99680 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5966g00018 6 490 B3 DNA Binding Superfamily AT5G20730 82.150 0.0 806
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pral5966g00018 AUX_IAA 9.7e-10 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5966g00018 K14486 - gmx:100804628 1581.62