Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5966g00017 ATGAAGGTAAAGACGGCACTATTTTTGCCTCTTGCTCTTTCTCAAGCCTGGGACTGCATCCTACCTTGTGCGACGAGCTCCGTGGAAGAATGGGTTTTGAAGTTCCAACCTCTGTACAAGCCCAAGCTATTCCTGTTATTCTCTCGGGGCGTCATGTTCTTGTTAATGCTGCCACGGGCACCGGGAAAACTGTTGCATACTTGGCTCCAATTATTCATCATTTGCAGAACTTTGATACCAGAATCCAACGGTCTGATGGAACATATGGTTTATGAAATTCTTCAAAAGTTATTGCATCGATTTCACTGGATTGTACCTGGATATGTAATGGGTGGTGAAAATAGGTCAAAAGAGAAGGCCAGGTTGCGCAAAGGCATATCAATTCTTGTAGCAACTCCTGGCCGCCTTTTAGATCACCTGAAGAATACATCATCATTCTTGTACACCAATTTGCGCTGGATAATCTTTGATGAAGCTGATAGGATTTTGGAATTAGGATTTGGAAAAGAAATAAAGGAAATACTAGATCATTTAGATGCAAAAACAGGTTGTGCTAACCAAGAGCATGCAGTTTCAAGGCACTCTGGAGCTCTAAGACAGAATTTGCTCTTATCAGCTACTTTAAACGAAAAAGTGAATCATCTTGCTAAAATTAGTCTAGAGAATCCTGTGATGATTGGTCTTGATGGCAAAGGGACAGAACCAATTTCGACAAAGGAGAGCCTTGATTCTTCAGAATCTGATGGGGAGAGTGAAGACAATGAAGAGAAGTATCCCAAAAACATGCTGCATACACCTGCCGGAGATTATAAAGTTCCCACACAATTGATTCAGAGATATGTTAAAGTACCTTGCGGTGCACGTCTTGCTGTTCTTCTTTCAATTGTGAAGTACCTTTCTGAAAGGGAAGCTTCACAAAAGATTGTGGTATTCTTTTCGACATGTGATGCGGTAGACTTCCACTTTTCACTGTTAAGGGAATTCCAGTTTTCTGCTCCACAATCAGAAGGAGATGCTAGACAGATGTTTCTGGGGTGTAAAGTGTTTCGTTTGCATGGGAACATGGATCAGGAGGACCGAAGGAATACTTTTCAGACGTTTAAAGCAGAGAAAGCAGCGCTGCTGTTTTCCACTGATGTAGCTGCTAGAGGACTGGATTTTCCAAAAGTCAGATGCATTATACAATATGATTCTCCAGGGGAAGCCACTGAATATGTACATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAGCCAGTTGAAATAGATTATTTACAGGACTTGGAAAAACATGGTGTATCACTGACGGACTATCCTCTCCTCAAAGTGTTGGATAGTTTCCCACTATATGGTCAAAAGAAGCATACCAAGAATTTTGTTGCCATAGAGTCGCATCCCTGGGTCATTTGTCTTCAGAAGGCACTTGAATCTTTCATCATGTCTAAGCCCAAAATTGATAAACTTGCCAAGAGGGGATTTTGCTCTTGGGTCCGTGCCTACGCTGCCCATCGTGGTGATTTGAAAAGGATATTTATGATCAAGAAACTCCACTTGGGGCATGTAGCAAAAAGCTTTGCACTTAAACAACAACCTTCCTTAGTTGCAAAGTCATACCAGAAGCAAGCTAAGAGGAAGAGGCTTCAGAAGCAAAGCGGGCTGGCTAAGAAGAGAAAGATCACCGGTGTGACATGA 1716 0.4219 MKVKTALFLPLALSQAWDCILPCATSSVEEWVLKFQPLYKPKLFLLFSRGVMFLLMLPRAPGKLLHTWLQLFIICRTLIPESNGLMEHMVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKNTSSFLYTNLRWIIFDEADRILELGFGKEIKEILDHLDAKTGCANQEHAVSRHSGALRQNLLLSATLNEKVNHLAKISLENPVMIGLDGKGTEPISTKESLDSSESDGESEDNEEKYPKNMLHTPAGDYKVPTQLIQRYVKVPCGARLAVLLSIVKYLSEREASQKIVVFFSTCDAVDFHFSLLREFQFSAPQSEGDARQMFLGCKVFRLHGNMDQEDRRNTFQTFKAEKAALLFSTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTDYPLLKVLDSFPLYGQKKHTKNFVAIESHPWVICLQKALESFIMSKPKIDKLAKRGFCSWVRAYAAHRGDLKRIFMIKKLHLGHVAKSFALKQQPSLVAKSYQKQAKRKRLQKQSGLAKKRKITGVT 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5966g00017 571 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 291 463 IPR001650 -
Pral5966g00017 571 Pfam Helicase conserved C-terminal domain 294 416 IPR001650 -
Pral5966g00017 571 PANTHER RNA HELICASE 90 536 - -
Pral5966g00017 571 Pfam DEAD/DEAH box helicase 92 214 IPR011545 GO:0003676|GO:0005524
Pral5966g00017 571 CDD SF2_C_DEAD 276 425 - -
Pral5966g00017 571 Gene3D - 83 228 IPR027417 -
Pral5966g00017 571 Pfam Domain of unknown function (DUF4217) 480 540 IPR025313 -
Pral5966g00017 571 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 155 163 IPR000629 -
Pral5966g00017 571 Gene3D - 287 567 IPR027417 -
Pral5966g00017 571 SMART ultradead3 34 239 IPR014001 -
Pral5966g00017 571 MobiDBLite consensus disorder prediction 233 265 - -
Pral5966g00017 571 SMART helicmild6 319 416 IPR001650 -
Pral5966g00017 571 SMART DUF4217_3 478 543 IPR025313 -
Pral5966g00017 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 437 IPR027417 -
Pral5966g00017 571 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 44 226 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5966g00017 Pral-Chr5966 70880 76473 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5966g00017 89 425 Eukaryotic Initiation Factors Gene Family AT5G11170 25.217 3.78e-20 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5966g00017 K14806 - gmx:100805157 725.702