Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5966g00016 ATGGGGGCGAAAAAAAGCGCGAATTCAAGTGAAGTAGTTATGGAAAATAAGATTAAGAAGAAGGAGGCGATCAACAATGAAGGTAAAGACGGCACTATTTTTGCCTCTTGCTCTTTCTCAAGCCTGGGACTGCATCCTACCTTGTGCGACGAGCTCCGTGGAAGAATGGGTTTTGAAGTTCCAACCTCTGTACAAGCCCAAGCTATTCCTGTTATTCTCTCGGGGCGTCATGTTCTTGTTAATGCTGCCACGGGCACCGGGAAAACTGTTGCATACTTGGCTCCAATTATTCATCATTTGCAGAACTTTGATACCAGAATCCAACGGTCTGATGGAACATATGCGTTGGTCCTTGTGCCAACGCGGGAGCTATGTTTGCAGGTTTATGAAATTCTTCAAAAGTTATTGCATCGATTTCACTGGATTGTACCTGGATATGTAATGGGTGGTGAAAATAGGTCAAAAGAGAAGGCCAGGTTGCGCAAAGGCATATCAATTCTTGTAGCAACTCCTGGCCGCCTTTTAGATCACCTGAAGAATACATCATCATTCTTGTACACCAATTTGCGCTGGATAATCTTTGATGAAGCTGATAGGATTTTGGAATTAGGATTTGGAAAAGAAATAAAGGAAATACTAGATCATTTAGATGCAAAAACAGGTTGTGCTAACCAAGAGCATGCAGTTTCAAGGCACTCTGGAGCTCTAAGACAGAATTTGCTCTTATCAGCTACTTTAAACGAAAAAGTGAATCATCTTGCTAAAATTAGTCTAGAGAATCCTGTGATGATTGGTCTTGATGGCAAAGGGACAGAACCAATTTCGACAAAGGAGAGCCTTGATTCTTCAGAATCTGATGGGGAGAGTGAAGACAATGAAGAGAAGTATCCCAAAAACATGCTGCATACACCTGCCGGAGATTATAAAGTTCCCACACAATTGATTCAGAGATATGTTAAAGTACCTTGCGGTGCACGTCTTGCTGTTCTTCTTTCAATTGTGAAGTACCTTTCTGAAAGGGAAGCTTCACAAAAGATTGTGGTATTCTTTTCGACATGTGATGCGGTAGACTTCCACTTTTCACTGTTAAGGGAATTCCAGTTTTCTGCTCCACAATCAGAAGGAGATGCTAGACAGATGTTTCTGGGGTGTAAAGTGTTTCGTTTGCATGGGAACATGGATCAGGAGGACCGAAGGAATACTTTTCAGACGTTTAAAGCAGAGAAAGCAGCGCTGCTGTTTTCCACTGATGTAGCTGCTAGAGGACTGGATTTTCCAAAAGTCAGATGCATTATACAATATGATTCTCCAGGGGAAGCCACTGAATATGTACATAGAGTTGGTAGAACTGCTCGGCTGGGTGAAAGAGGAGAGTCATTGTTATTTCTGCAGCCAGTTGAAATAGATTATTTACAGGACTTGGAAAAACATGGTGTATCACTGACGGACTATCCTCTCCTCAAAGTGTTGGATAGTTTCCCACTATATGGTCAAAAGAAGCATACCAAGAATTTTGTTGCCATAGAGTCGCATCCCTGGGTCATTTGTCTTCAGAAGGCACTTGAATCTTTCATCATGTCTAAGCCCAAAATTGATAAACTTGCCAAGAGGGGATTTTGCTCTTGGGTCCGTGCCTACGCTGCCCATCGTGGTGATTTGAAAAGGATATTTATGATCAAGAAACTCCACTTGGGGCATGTAGCAAAAAGCTTTGCACTTAAACAACAACCTTCCTTAGTTGCAAAGTCATACCAGAAGCAAGCTAAGAGGAAGAGGCTTCAGAAGCAAAGCGGGCTGGCTAAGAAGAGAAAGATCACCGGTGTGACATGA 1830 0.424 MGAKKSANSSEVVMENKIKKKEAINNEGKDGTIFASCSFSSLGLHPTLCDELRGRMGFEVPTSVQAQAIPVILSGRHVLVNAATGTGKTVAYLAPIIHHLQNFDTRIQRSDGTYALVLVPTRELCLQVYEILQKLLHRFHWIVPGYVMGGENRSKEKARLRKGISILVATPGRLLDHLKNTSSFLYTNLRWIIFDEADRILELGFGKEIKEILDHLDAKTGCANQEHAVSRHSGALRQNLLLSATLNEKVNHLAKISLENPVMIGLDGKGTEPISTKESLDSSESDGESEDNEEKYPKNMLHTPAGDYKVPTQLIQRYVKVPCGARLAVLLSIVKYLSEREASQKIVVFFSTCDAVDFHFSLLREFQFSAPQSEGDARQMFLGCKVFRLHGNMDQEDRRNTFQTFKAEKAALLFSTDVAARGLDFPKVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPVEIDYLQDLEKHGVSLTDYPLLKVLDSFPLYGQKKHTKNFVAIESHPWVICLQKALESFIMSKPKIDKLAKRGFCSWVRAYAAHRGDLKRIFMIKKLHLGHVAKSFALKQQPSLVAKSYQKQAKRKRLQKQSGLAKKRKITGVT 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5966g00016 609 CDD DEADc_DDX31 48 265 - -
Pral5966g00016 609 SMART ultradead3 57 277 IPR014001 -
Pral5966g00016 609 Pfam Domain of unknown function (DUF4217) 518 578 IPR025313 -
Pral5966g00016 609 CDD SF2_C_DEAD 314 463 - -
Pral5966g00016 609 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 329 501 IPR001650 -
Pral5966g00016 609 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 66 IPR014014 GO:0003724
Pral5966g00016 609 MobiDBLite consensus disorder prediction 271 303 - -
Pral5966g00016 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 33 264 IPR027417 -
Pral5966g00016 609 Pfam DEAD/DEAH box helicase 62 252 IPR011545 GO:0003676|GO:0005524
Pral5966g00016 609 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 193 201 IPR000629 -
Pral5966g00016 609 Gene3D - 324 605 IPR027417 -
Pral5966g00016 609 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 75 484 IPR027417 -
Pral5966g00016 609 PANTHER RNA HELICASE 27 537 - -
Pral5966g00016 609 Gene3D - 3 267 IPR027417 -
Pral5966g00016 609 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 264 IPR014001 -
Pral5966g00016 609 SMART helicmild6 357 454 IPR001650 -
Pral5966g00016 609 FunFam RNA helicase 2 266 - -
Pral5966g00016 609 Pfam Helicase conserved C-terminal domain 332 454 IPR001650 -
Pral5966g00016 609 SMART DUF4217_3 516 581 IPR025313 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5966g00016 Pral-Chr5966 70880 76473 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5966g00016 27 491 Eukaryotic Initiation Factors Gene Family AT3G19760 26.439 7.72e-34 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5966g00016 K14806 - gmx:100805157 890.182