Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5960g00005 ATGAACAGAACTCCAAAGGAAGCAGATTTCTCATTAAAACAGGAAAACCATGACAAAGCGAAGGCTTCAACTTCATCAAGCAGCTTAACAACACAATGGCTAAGATCAAAGGATTCAAGGATTGTTCGAGTTTCACGAGCCTTGGGAGGTAAAGATCGTCACAGCAAGGTTTGTACAGTGAGAGGACTGAGAGATAGACGAGTGAGACTTTCAGTACCCACAGCTATTCAGCTATATGATCTTCAAGACAGGTTAGGGTTTAATCAGCCCAGTAAGGTTGTGGATTGGTTGCTTGATGTAGCTAAACATGAAATTGATGAACTCCCACCACTGCAAATTCCACCTGGAAGCTTCAGTTTCTATCATCAACCATCTGGAGTAACTTTCATGAACAATGATGAAATTATAACTAGTTCTCAGCAAAATGAACAAGAATTTAACATCAATGAGAGTCTTCATCATCACTTGGAAGGTTCAAACCCAATCATGTCCAAGTCTAAAGGAGAAGTGGCTGTTGAGAAAGCAAATTGGAACAGAAGGGAAGAAGATAGAGAGAATGTGTTAACAAGAGGAAACAATCATCATCATCATCCTTCTTTTCTGGGTTTGTTGAACACTATGCCACTCGGTTATACTGTTAATAACCAATGGGAGGCTAATTCAAGCGACGTTTCTCACTCAGGAAACCTTGGATTTGCAAACCAGCATCAGACAGATTCTAACGCTGTACCTTTCTCAGCACTGTCATCAAACTTGTCTTTATCAACTGGACAGATAACTCAGCCATATTTTCCTTCACATTTTGGAGCAATGGACGTGGATCCAAGGCAGATCAATGAGTATCAGATGTTGAGTTCATCAAATTCTCTGGTGAGTCCTTCTGCTAATACTACAAGCCAACCTACGAAGCCATTCAGCTTGAGTATGATGATGAATCCTAAACTTCTCCGATCATCCAACAGCAGTGAAACACAATGTCGTAAGAAAGACCGGGTTTTTCCTTCCAAGTGA 1011 0.4075 MNRTPKEADFSLKQENHDKAKASTSSSSLTTQWLRSKDSRIVRVSRALGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGFNQPSKVVDWLLDVAKHEIDELPPLQIPPGSFSFYHQPSGVTFMNNDEIITSSQQNEQEFNINESLHHHLEGSNPIMSKSKGEVAVEKANWNRREEDRENVLTRGNNHHHHPSFLGLLNTMPLGYTVNNQWEANSSDVSHSGNLGFANQHQTDSNAVPFSALSSNLSLSTGQITQPYFPSHFGAMDVDPRQINEYQMLSSSNSLVSPSANTTSQPTKPFSLSMMMNPKLLRSSNSSETQCRKKDRVFPSK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5960g00005 336 MobiDBLite consensus disorder prediction 1 31 - -
Pral5960g00005 336 ProSiteProfiles TCP domain profile. 50 108 IPR017887 -
Pral5960g00005 336 MobiDBLite consensus disorder prediction 1 20 - -
Pral5960g00005 336 MobiDBLite consensus disorder prediction 287 336 - -
Pral5960g00005 336 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 9 310 IPR005333 GO:0003700
Pral5960g00005 336 Pfam TCP family transcription factor 50 185 IPR017887 -
Pral5960g00005 336 MobiDBLite consensus disorder prediction 287 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5960g00005 Pral-Chr5960 70286 72375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5960g00005 21 195 TCP Transcription Factor Family AT3G02150 53.591 1.06e-47 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Pral5960g00005 TCP 4.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5960g00005 - - var:108327895 291.967