Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5957g00005 ATGACCGAGAGGAGAAGAAGACAGGACCTCACTCAAAAGTTCATAGCACTCGCCGCCACCATCCCCGGCTTGAAGAAGATGGACAAGGCGACTGTCCTTTGTGCGGCGACCGATTACGTGAAGCGACTTCAAGAGCGAGTGAGAGAACTAGCCCAGGAAGCGGTTGAGGTTCCAGAAATGGAAGTGAGGGTTCTGGAGAATGAAGTTCTGGTTCGGGTTCAGTGCGAGGGCCGACGAGATATGATGCGGAAGACGGTGGAACTCCTTGGACACGTTCATCTCTCAGTCTTATGCTGTAACTCTCTGGCTTTTGGAAACTCTGCTTTGAGCATCACCATTGTTGCTCAGATGAAGGACCAATACAAGATGAAGGTGAATAAAGAGACAAAGGAAGGGGGATTACGATAG 408 0.5025 MTERRRRQDLTQKFIALAATIPGLKKMDKATVLCAATDYVKRLQERVRELAQEAVEVPEMEVRVLENEVLVRVQCEGRRDMMRKTVELLGHVHLSVLCCNSLAFGNSALSITIVAQMKDQYKMKVNKETKEGGLR 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5957g00005 135 Pfam Helix-loop-helix DNA-binding domain 2 44 IPR011598 GO:0046983
Pral5957g00005 135 PANTHER BHLH TRANSCRIPTION FACTOR 1 126 - -
Pral5957g00005 135 Coils Coil 134 135 - -
Pral5957g00005 135 Gene3D - 1 59 IPR036638 GO:0046983
Pral5957g00005 135 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 43 IPR011598 GO:0046983
Pral5957g00005 135 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 1 54 IPR036638 GO:0046983
Pral5957g00005 135 SMART finulus 1 49 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5957g00005 Pral-Chr5957 43680 44350 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5957g00005 1 123 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 32.278 1.32e-22 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pral5957g00005 HLH 5.8e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5957g00005 - - pcin:129287632 120.938