Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5954g00013 ATGGCGTACCACAACCATCATCTCTCTCAAGACCTGCCGCTCCACCATTTCACAGAGCAATCTCATCACCAGCAGCAGCAGAACCAGGCGCTGACTGATAACTCCTTGCGGACGATATTGCAGGACCCGACCAGTAAGGCCGGCTCCGATCCCCACCAACACCACCACCCGCTTCAAACCGCTCCCAATTGGCTCAACAACGCTCTCCTCCGAACTCACTACACCGACAATAACAACGGCAACAACAGTAACAGAACTGCTCCTAACAATACCAACGCCACCAATTTCCTCAACCTCCATACCGCCGCCTCCGACTCCACCGGAGCTGCTTCCCAATCCTCCAGCCAATGGCTGGCACGCCCGATCCTCCACCGGAATCATAGCGACGTCATTGACGACGTCACCGCCGGGGACTCTATCATCGCCGGTGCGACTTTGTCCCATGAGTCCGCGGATTTAAAGGCGACCGGTGACAACCTCAACAGCAAGGGCGAGGCGGTGGTGGTGGACAGCTCCGGCGCCACCGGGGACGGTTTGATGAACTGGCAGAATGCTCGCTTCAAGGCGGAGATTCTTGCCCACCCGCTGTACGAACAGCTGCTATCGGCACACGTGGCGTGCCTGCGGATCGCCACGCCGGTTGACCAGCTGCCGAGGATCGATGCTCAACTGGCTCAGTCGCAGAATGTGGTTGCCAAGTACTCGGCGTTGGGACACGGGAGCCAGAGCATGGTTGGGGACGATAAGGAACTCGATCAGTTCATGTCGCACTATGTCTTGTTGCTTTGTTCATTCAAAGAACAACTTCAACAACACGTCAGGGTCCATGCAATGGAAGCAGTGATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGAGTTTCACCAGGAGAAGGCACAGGGGCAACAATGTCAGATGATGAAGACGATCAGGTGGACAGTGATGCCAACCTGTTTGATGGTAGTATGGATGGTTCAGACATGGGATTTGGTCCCCTGATTCCAACGGAGAACGAGAGGTCCCTCATGGAGCGTGTAAGGCAGGAATTAAAGCACGAACTCAAACAGGGCTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTGCGCAAGAGACGAGCTGGGAAACTTCCTGGTGACACCACCTCCGTTCTTAAAACTTGGTGGCAGTCACATGCCAAGTGGCCTTACCCTACAGAGGAAGACAAAGCAAGGTTGGTTCAGGAAACTGGCTTGCAATTGAAGCAGATTAACAATTGGTTCATCAACCAAAGGAAGAGAAACTGGCACAGCAATCCCTCCACCTCAACGGTGTTGAAGAGCAAGCGCAAAAGAAGTAATGCAGGTGATAACAGTAACGCGGATCGTTACATTTAA 1389 0.5299 MAYHNHHLSQDLPLHHFTEQSHHQQQQNQALTDNSLRTILQDPTSKAGSDPHQHHHPLQTAPNWLNNALLRTHYTDNNNGNNSNRTAPNNTNATNFLNLHTAASDSTGAASQSSSQWLARPILHRNHSDVIDDVTAGDSIIAGATLSHESADLKATGDNLNSKGEAVVVDSSGATGDGLMNWQNARFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGSQSMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSMDGSDMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKTWWQSHAKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKRSNAGDNSNADRYI 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5954g00013 462 SMART HOX_1 374 439 IPR001356 GO:0003677
Pral5954g00013 462 SUPERFAMILY Homeodomain-like 374 437 IPR009057 -
Pral5954g00013 462 MobiDBLite consensus disorder prediction 41 60 - -
Pral5954g00013 462 Pfam KNOX1 domain 188 228 IPR005540 GO:0003677|GO:0005634
Pral5954g00013 462 CDD homeodomain 375 436 IPR001356 GO:0003677
Pral5954g00013 462 SMART KNOX2_2 241 296 IPR005541 GO:0003677|GO:0005634
Pral5954g00013 462 Pfam ELK domain 352 373 IPR005539 GO:0003677
Pral5954g00013 462 Pfam KNOX2 domain 245 295 IPR005541 GO:0003677|GO:0005634
Pral5954g00013 462 Pfam Homeobox KN domain 392 431 IPR008422 GO:0003677|GO:0006355
Pral5954g00013 462 ProSiteProfiles 'Homeobox' domain profile. 372 435 IPR001356 GO:0003677
Pral5954g00013 462 Gene3D - 373 434 - -
Pral5954g00013 462 SMART KNOX1_2 185 229 IPR005540 GO:0003677|GO:0005634
Pral5954g00013 462 ProSiteProfiles ELK domain profile. 352 372 IPR005539 GO:0003677
Pral5954g00013 462 SMART ELK_2 352 373 IPR005539 GO:0003677
Pral5954g00013 462 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 32 440 - -
Pral5954g00013 462 FunFam homeobox protein knotted-1-like 3 isoform X1 373 434 - -
Pral5954g00013 462 MobiDBLite consensus disorder prediction 435 462 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5954g00013 Pral-Chr5954 94823 98871 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5954g00013 1 449 Homeobox Transcription Factor Family AT5G25220 65.957 0.0 565
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Pral5954g00013 KNOX2 1.3e-21 No_clan