Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5954g00006 ATGGGCAGGCCACAACAGAGATACCGAGGCGTCCGACAAAGGCATTGGGGTTCTTGGGTCTCTGAAATTCGCCATCCTCTATTGAAGACTAGGATTTGGCTTGGTACTTTCGAAACCGCAGAGGATGCAGCCAGAGCCTACGATGAAGCAGCGAGGCTAATGTGTGGGCCCAGAGCAAGAACCAACTTCCCTTATAACCCCAATGCGTCTCAGTCATCTTCCAAGCTTCTCTCAGCCACTTTGACTGCGAAACTCCATAGGTGCTATGTGGCTTCTCTGCAGATGACTAGACCTTCATTACCAGAGCCTCAGAGAGTGGCTTCTTCGCCACATACTGACGTTTCCGCCAGCAACTCTTCTGGTACAGTGTTGCCACGCAAGAGAGCCCACGAAGAGCAAGAATCAGAGGCCAATTGGGTCATGAAGAAGGTGAAGGTGGAAACTAATCAGCAATTCAAACCTCTTGAAGAGGATCACATTGAGCAGATGATAGAGGAATTGCTTGATTACGGTTCTATTGAACTCTGCTCTGTGATGGACTAA 543 0.4917 MGRPQQRYRGVRQRHWGSWVSEIRHPLLKTRIWLGTFETAEDAARAYDEAARLMCGPRARTNFPYNPNASQSSSKLLSATLTAKLHRCYVASLQMTRPSLPEPQRVASSPHTDVSASNSSGTVLPRKRAHEEQESEANWVMKKVKVETNQQFKPLEEDHIEQMIEELLDYGSIELCSVMD 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5954g00006 180 MobiDBLite consensus disorder prediction 100 124 - -
Pral5954g00006 180 FunFam Ethylene-responsive transcription factor 2 6 65 - -
Pral5954g00006 180 PRINTS Ethylene responsive element binding protein signature 8 19 IPR001471 GO:0003700|GO:0006355
Pral5954g00006 180 PRINTS Ethylene responsive element binding protein signature 30 46 IPR001471 GO:0003700|GO:0006355
Pral5954g00006 180 ProSiteProfiles AP2/ERF domain profile. 7 64 IPR001471 GO:0003700|GO:0006355
Pral5954g00006 180 SMART rav1_2 7 70 IPR001471 GO:0003700|GO:0006355
Pral5954g00006 180 Pfam AP2 domain 7 56 IPR001471 GO:0003700|GO:0006355
Pral5954g00006 180 CDD AP2 6 66 IPR001471 GO:0003700|GO:0006355
Pral5954g00006 180 Gene3D AP2/ERF domain 6 65 IPR036955 GO:0003700|GO:0006355
Pral5954g00006 180 SUPERFAMILY DNA-binding domain 7 66 IPR016177 GO:0003677
Pral5954g00006 180 MobiDBLite consensus disorder prediction 100 136 - -
Pral5954g00006 180 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5954g00006 Pral-Chr5954 48099 49136 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5954g00006 1 179 AP2-EREBP Transcription Factor Family AT5G25190 66.298 7.25e-78 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pral5954g00006 AP2 7.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5954g00006 - - qsa:O6P43_019253 270.396