Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pral5954g00003 ATGGAAGAACTGAGGAACGACGTATGCCTGCATCAACTTGTTGAAGATGAAGACGAAAACTGCCAAGAAGACAAGGTCAAGACACAAACTTTATTTGATCTTAATGCTTCTGGTCATAATTCTGGTCTTGAGAACAGCCCTGAACTCAATCTCATCACTTGCTTGGATCAGACTTCATCAAAAACATCATCAGAAAGTTGTGCTGATGGTGCCGGTGCCGGTGCCGGTGCCGGTTCAGAAGCAGAACCACGATTTTTCTCATGTAATTACTGCCAGAGAAAGTTCTACAGTTCACAAGCGCTTGGGGGACATCAAAATGCGCACAAAAGGGAGAGATCAATCGCGAAAAGAGGACAGAGACTCGGAACGCAAATACTGGCTTCAGCAGCAGCTTATGGGCATCCCTTTCTGCATAATTATGGGTATGCGAGCATGGCGTCTCTGCCTCTATATGGTGCTGCCTGCAATAATAGGCCTCTGGGGATTCAGGCTCACTCCTTGATCCACAAGCCATCTAATAATGTTCATAGGGCTTGGTCACAACAGCCTGGGATAGGGAAACTAGAGATGGTGAATTTTCATAAAACGACGTCGGGATTAGCTTCGAGAGGCAGTGTGGGGAGGTTTGAAATGATGAAGACCAAGATGGGTTCTGCAGAAAATGAAGAGATCAGTGGGTATTTGGTGAGTGGGACTCATTGTTTGAAGACAAATCCGGAAGAAATGAAGCACCTTGATTTGTCTCTCAAGCTTTAG 756 0.4563 MEELRNDVCLHQLVEDEDENCQEDKVKTQTLFDLNASGHNSGLENSPELNLITCLDQTSSKTSSESCADGAGAGAGAGSEAEPRFFSCNYCQRKFYSSQALGGHQNAHKRERSIAKRGQRLGTQILASAAAYGHPFLHNYGYASMASLPLYGAACNNRPLGIQAHSLIHKPSNNVHRAWSQQPGIGKLEMVNFHKTTSGLASRGSVGRFEMMKTKMGSAENEEISGYLVSGTHCLKTNPEEMKHLDLSLKL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pral5954g00003 251 ProSitePatterns Zinc finger C2H2 type domain signature. 88 108 IPR013087 -
Pral5954g00003 251 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 15 251 IPR044246 GO:0009788
Pral5954g00003 251 Gene3D Classic Zinc Finger 75 133 - -
Pral5954g00003 251 SUPERFAMILY beta-beta-alpha zinc fingers 83 113 IPR036236 -
Pral5954g00003 251 ProSiteProfiles Zinc finger C2H2 type domain profile. 86 113 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pral5954g00003 Pral-Chr5954 25574 26651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pral5954g00003 14 251 C2H2 Transcription Factor Family AT5G10970 41.313 1.06e-38 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pral5954g00003 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pral5954g00003 - - pcin:129303916 409.068